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Fuessl, Marion and Reinders, Jörg and Oefner, Peter J. and Heinze, Jürgen and Schrempf, Alexandra (2014) Selenophosphate-synthetase in the male accessory glands of an insect without selenoproteins. Journal of insect physiology 71, pp. 46-51.

Hau, Peter and Moeckel, Sylvia and Meyer, Katharina and Leukel, Petra and Heudorfer, Fabian and Seliger, Corinna and Stangl, Christina and Bogdahn, Ulrich and Proescholdt, Martin A. and Brawanski, Alexander and Vollmann-Zwerenz, Arabel and Riemenschneider, Markus J. and Bosserhoff, Anja-Katrin and Spang, Rainer (2014) Response-Predictive Gene Expression Profiling of Glioma Progenitor Cells In Vitro. PLoS ONE 9 (9), e108632.

Winkler, Thomas W. and Kutalik, Zoltan and Gorski, Mathias and Lottaz, Claudio and Kronenberg, Florian and Heid, Iris M. (2014) EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data. Bioinformatics, btu621.

Oefner, Peter J. (2014) What Identity Crisis? Rapidly Mutating Y-STRs Facilitate Differentiation of Males. Human mutation 35 (8), v.

Vossenkämper, Anna and Hundsrucker, Christian and Page, Kevin and van Maurik, Andre and Sanders, Theodore J. and Stagg, Andrew J. and Das, Lisa and MacDonald, Thomas T. (2014) A CD3-Specific Antibody Reduces Cytokine Production and Alters Phosphoprotein Profiles in Intestinal Tissues From Patients With Inflammatory Bowel Disease. The American Journal of Gastroenterology 147 (1), pp. 172-183.

Dettmer, Katja (2014) Assessment of ionic liquid stationary phases for the GC analysis of fatty acid methyl esters. Analytical and Bioanalytical Chemistry 406, pp. 4931-4939.

Hannus, Michael and Beitzinger, Michaela and Engelmann, Julia C. and Weickert, Marie-Theresa and Spang, Rainer and Hannus, Stefan and Meister, Gunter (2014) siPools: highly complex but accurately defined siRNA pools eliminate off-target effects. Nucleic Acids Research 42, pp. 8049-8061.

Pauly, Diana and Nagel, Benedik M. and Reinders, Jörg and Kilian, Tobias and Wulf, Matthias and Ackermann, Susanne and Ehrenstein, Boris and Zipfel, Peter F. and Skerka, Christine and Weber, Bernhard H. F. (2014) A Novel Antibody against Human Properdin Inhibits the Alternative Complement System and Specifically Detects Properdin from Blood Samples. PLos ONE 9 (5), e96371.

Jitschin, Regina and Braun, Martina and Büttner, Maike and Dettmer, Katja and Bricks, Juliane and Berger, Jana and Eckart, Michael J. and Krause, Stefan W and Oefner, Peter and Le Blanc, Katarina and Mackensen, Andreas and Mougiakakos, Dimitrios (2014) CLL-cells induce IDOhi CD14+HLA-DRlo myeloid derived suppressor cells that inhibit T-cell responses and promote TRegs. Blood.

Holler, Ernst and Butzhammer, Peter and Schmid, Karin and Hundsrucker, Christian and Koestler, Josef and Peter, Katrin and Zhu, Wentao and Sporrer, Daniela and Hehlgans, Thomas and Kreutz, Marina and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Andreesen, Reinhard and Levine, John E. and Ferrara, James L and Gessner, Andre and Spang, Rainer and Oefner, Peter J. (2014) Metagenomic analysis of the stool microbiome in patients receiving allogeneic SCT: Loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal GvHD. Biology of Blood and Marrow Transplantation 20 (5), pp. 640-645.

del Jel, Miriam M. and Engelmann, Julia and Kunz, Manfred and Schiffner, Susanne and Kuphal, Silke and Anja, Bosserhoff (2014) Transcriptome sequencing of melanocytic nevi and melanomas from Grm1 transgenic mice to determine melanoma driver mutations. Pigment Cell & Melanoma Research 27, pp. 678-680.

Valletta, Daniela and Czech, Barbara and Spruss, Thilo and Ikenberg, Kristian and Wild, Peter J. and Hartmann, Arndt and Weiss, Thomas S. and Oefner, Peter J. and Müller, Martina and Bosserhoff, Anja-Katrin and Hellerbrand, Claus (2014) Regulation and function of the atypical cadherin FAT1 in hepatocellular carcinoma. Carcinogenesis 35, pp. 1407-1415.

Dümcke, Sebastian and Bräuer, Johannes and Anchang, Benedict Nchang and Spang, Rainer and Beerenwinkel, Niko and Tresch, Achim (2014) Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics 30 (3), pp. 414-419.

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

Ruedel, Anke and Stark, Klaus and Kaufmann, Simone and Bauer, Richard and Reinders, Jörg and Rovensky, Jozef and Blazicková, Stanislava and Oefner, Peter J. and Bosserhoff, Anja Katrin (2014) N-cadherin promoter polymorphisms and risk of osteoarthritis. FASEB journal 28 (2), pp. 683-691.

Bedal, Konstanze B. and Grässel, Susanne and Oefner, Peter J. and Reinders, Jörg and Reichert, Torsten E. and Bauer, Richard (2014) Collagen XVI induces expression of MMP9 via modulation of AP-1 transcription factors and facilitates invasion of oral squamous cell carcinoma. Plos One 9.

Salaverria, Itziar and Martin-Guerrero, Idoia and Wagener, Rabea and Kreuz, Markus and Kohler, Christian and Richter, Julia and Pienkowska-Grela, Barbara and Adam, Patrick and Burkhardt, Birgit and Claviez, Alexander and Damm-Welk, Christine and Drexler, H. G. and Hummel, Michael and Jaffe, Elaine S. and Kueppers, Ralf and Lefebvre, Christine and Lisfeld, Jasmin and Loeffler, Markus and Mcleod, Roderick A. and Nagel, Inga and Oschlies, Ilske and Rosolowski, Maciej and Russell, Robert B. and Rymkiewicz, Grzegorz and Schindler, Detlev and Schlesner, Matthias and Scholtysik, Rene and Schwaenen, Carsten and Spang, Rainer and Szczepanowski, Monika and Truemper, Lorenz and Vater, Inga and Wessendorf, Swen and Klapper, Wolfram and Siebert, Rainer (2014) A recurrent 11q aberration pattern characterizes a subset of MYC-negative high-grade B-cell lymphomas resembling Burkitt lymphoma. Blood 123, pp. 1187-1198.

Klootwijk, Enriko D. and Reichold, Markus and Helip-Wooley, Amanda and Tolaymat, Asad and Broeker, Carsten and Robinette, Steven and Reinders, Jörg and Peindl, Dominika Elisabeth and Renner, Kathrin and Eberhart, Karin and Aßmann, Nadine and Oefner, Peter J. and Dettmer, Katja and Sterner, Christina and Schroeder, Josef and Zorger, Niels and Witzgall, Ralph and Reinhold, Stephan W. and Stanescu, Horia C. and Bockenhauer, Detlef and Jaureguiberry, Gracian and Courtneidge, Holly and Hall, Andrew M. and Wijeyesekera, Anisha and Holmes, Elaine and Nicholson, Jeremy K. and O´Brien, Kevin and Bernardini, Isa and Krasnewich, Donna M. and Arcos-Burgos, Mauricio and Izumi, Yuichiro and Nonoguchi, Hiroshi and Jia, Yuzhi and Reddy, Janardan K. and Ilya, Mohammad and Unwin, Robert J. and Gahl, William A. and Warth, Richard and Kleta, Robert (2014) Mistargeting of Peroxisomal EHHADH and Inherited Renal Fanconi's Syndrome. The New England Journal of Medicine 370, pp. 129-138.

Kuipers, Jack and Moffa, Giusi and Heckerman, David (2014) Addendum on the scoring of Gaussian directed acyclic graphical models. Annals of Statistics. (In Press)

Moffa, Giusi and Kuipers, Jack (2014) Sequential Monte Carlo EM for multivariate probit models. Comp. Stats. & Data An. 72, pp. 252-272.

Paul, Katharina and Kretzschmar, Daniel and Yilmaz, Atilla and Bärthlein, Barbara and Titze, Stephanie and Wolf, Gunter and Busch, Martin (2013) Circulating dendritic cell precursors in chronic kidney disease: a cross-sectional study. BMC nephrology 14, p. 274.

Czech, Barbara and Dettmer, Katja and Valletta, Daniela and Saugspier, Michael Sebastian and Koch, Andreas and Stevens, Axel Peter and Thasler, Wolfgang E. and Müller, Martina and Oefner, Peter J. and Bosserhoff, Anja-Katrin and Hellerbrand, Claus (2013) Expression and function of methylthioadenosine phosphorylase in chronic liver disease. PloS ONE 8 (12), e80703.

Schmid, Rainer and Meyer, Katharina and Spang, Rainer and Schittek, Birgit and Bosserhoff, Anja-Katrin (2013) YBX1 is a modulator of MIA/CD-RAP-dependent chondrogenesis. PLoS ONE 8 (12).

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

Sadeh, Mohammad Javad and Moffa, Giusi and Spang, Rainer (2013) Considering unknown unknowns: reconstruction of nonconfoundable causal relations in biological networks. Journal of computational biology 20 (11), pp. 920-932.

Burghardt, Tillmann and Kastner, Jürgen and Suleiman, Hani and Rivera-Milla, Eric and Stepanova, Natalya and Lottaz, Claudio and Kubitza, Marion and Böger, Carsten A. and Schmidt, Sarah and Gorski, Mathias and de Vries, Uwe and Schmidt, Helga and Hertting, Irmgard and Kopp, Jeffrey and Rascle, Anne and Moser, Markus and Heid, Iris M. and Warth, Richard and Spang, Rainer and Wegener, Joachim and Mierke, Claudia T. and Englert, Christoph and Witzgall, Ralph (2013) LMX1B is essential for the maintenance of differentiated podocytes in adult kidneys. Journal of the American Society of Nephrology : JASN 24 (11), pp. 1830-1848.

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

Voloshanenko, Oksana and Erdmann, Gerrit and Dubash, Taronish D and Augustin, Iris and Metzig, Marie and Moffa, Giusi and Hundsrucker, Christian and Kerr, Grainne and Sandmann, Thomas and Anchang, Benedikt and Demir, Kubilay and Boehm, Christina and Leible, Svenja and Ball, Claudia R and Glimm, Hanno and Spang, Rainer and Boutros, Michael (2013) Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells. Nature communications 4, p. 2610.

Tea, Muy-Kheng M. and Kroiss, Regina and Muhr, Daniela and Fuerhauser-Rappaport, Christine and Oefner, Peter J. and Wagner, Teresa M and Singer, Christian F. (2013) Central European BRCA2 mutation carriers: Birth cohort status correlates with onset of breast cancer. Maturitas.

Dettmer, Katja and Vogl, Franziska C. and Ritter, Axel P. and Zhu, Wentao and Nürnberger, Nadine and Kreutz, Marina and Oefner, Peter J. and Gronwald, Wolfram and Gottfried, Eva (2013) Distinct metabolic differences between various human cancer and primary cells. ELECTROPHORESIS 34 (19), pp. 2836-2847.

Masqué-Soler, Neus and Szczepanowski, Monika and Kohler, Christian and Spang, Rainer and Klapper, Wolfram (2013) Molecular classification of mature aggressive B-cell lymphoma using digital multiplexed gene expression on formalin-fixed paraffin-embedded biopsy specimens. Blood 122 (11), pp. 1985-1986.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

Schmid, Rainer and Meyer, Katharina and Spang, Rainer and Schittek, Birgit and Bosserhoff, Anja-Katrin (2013) Melanoma inhibitory activity promotes melanoma development through activation of YBX1. Pigment cell & melanoma research 26 (5), pp. 685-696.

Kreutz, Marina and Gottfried, Eva and Lang, Sven A. and Renner, Kathrin and Bosserhoff, Anja-Katrin and Gronwald, Wolfram and Rehli, Michael and Einhell, Sabine and Gedig, Isabell and Singer, Katrin and Seilbeck, Anton and Mackensen, Andreas and Grauer, Oliver and Hau, Peter and Dettmer, Katja and Andreesen, Reinhard and Oefner, Peter (2013) New aspects of an old drug: Diclofenac targets MYC and glucose metabolism in tumor cells. PLoS ONE 8 (7), e66987.

Sadeh, Mohammad Javad (2013) Considering unknown unknown: reconstruction of non-confoundable causal relations in biological networks. PhD, Universität Regensburg

Zacharias, Helena and Schley, Gunnar and Hochrein, Jochen and Klein, Matthias S. and Köberle, Carmen and Eckardt, Kai-Uwe and Willam, Carsten and Oefner, Peter J. and Gronwald, Wolfram (2013) Analysis of human urine reveals metabolic changes related to the development of acute kidney injury following cardiac surgery. Metabolomics 9 (3), pp. 697-707.

Bauer, Karin and Gosau, Martin and Reinders, Jörg and Oefner, Peter J. and Reichert, Torsten E. and Bauer, Richard (2013) Presenilin1/gamma-secretase modulates P-cadherin processing and influences cell adhesion in oral squamous cell carcinoma cell lines. Carcinogenesis 34, pp. 2622-2628.

Klein, Matthias S. and Oefner, Peter J. and Gronwald, Wolfram (2013) MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D (1)H and (1)H-(13)C HSQC NMR spectra. BioTechniques 54 (5), pp. 251-256.

Meyer, Katharina (2013) Dissolving heterogeneity in cancer. PhD, Universität Regensburg

Walther, Neele and Ulrich, Antje and Vockerodt, Martina and von Bonin, Frederike and Klapper, Wolfram and Meyer, Katharina and Eberth, Sonja and Pukrop, Tobias and Spang, Rainer and Trümper, Lorenz and Kube, Dieter (2013) Aberrant lymphocyte enhancer-binding factor 1 expression is characteristic for sporadic Burkitt's lymphoma. The American journal of pathology 182 (4), pp. 1092-1098.

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

Kelly, Gemma L and Stylianou, Julianna and Rasaiyaah, Jane and Wei, Wenbin and Thomas, Wendy and Croom-Carter, Deborah and Kohler, Christian and Spang, Rainer and Woodman, Ciaran and Kellam, Paul and Rickinson, Alan N. and Bell, Andrew I. (2013) Different patterns of Epstein-Barr virus latency in endemic Burkitt lymphoma (BL) lead to distinct variants within the BL-associated gene expression signature. Journal of virology 87 (5), pp. 2882-2894.

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

Demir, Fatih and Horntrich, Claudia and Blachutzik, Jörg O and Scherzer, Sönke and Reinders, Yvonne and Kierszniowska, Sylwia and Schulze, Waltraud X. and Harms, Gregory S. and Hedrich, Rainer and Geiger, Dietmar and Kreuzer, Ines (2013) Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. Proceedings of the National Academy of Sciences of the United States of America 110 (20), pp. 8296-82301.

Pietzner, Julia and Baer, P. C. and Duecker, R. P. and Merscher, M. B. and Satzger-Prodinger, C. and Bechmann, I. and Wietelmann, A. and Del Turco, D. and Doering, C. and Kuci, S. and Bader, P. and Schirmer, Sophie and Zielen, S. and Schubert, R. (2013) Bone marrow transplantation improves the outcome of Atm-deficient mice through the migration of ATM-competent cells. Human molecular genetics 22 (3), pp. 493-507.

Krentz, S and Hof, J and Mendioroz, A and Vaggopoulou, R and Dörge, P and Lottaz, Claudio and Engelmann, Julia and Groeneveld, T W L and Körner, G and Seeger, K and Hagemeier, C and Henze, G and Eckert, C and von Stackelberg, A and Kirschner-Schwabe, R (2013) Prognostic value of genetic alterations in children with first bone marrow relapse of childhood B-cell precursor acute lymphoblastic leukemia. Leukemia 27 (2), pp. 295-304.

Aryee, Martin J and Liu, Wennuan and Engelmann, Julia C. and Nuhn, Philipp and Gurel, Meltem and Haffner, Michael C and Esopi, David and Irizarry, Rafael A and Getzenberg, Robert H and Nelson, William G and Luo, Jun and Xu, Jianfeng and Isaacs, William B and Bova, G Steven and Yegnasubramanian, Srinivasan (2013) DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases. Science translational medicine 5 (169), 169ra10.

Aukema, Sietse M and Kreuz, Markus and Kohler, Christian and Rosolowski, Maciej and Hasenclever, Dirk and Hummel, Michael and Küppers, Ralf and Lenze, Dido and Ott, German and Pott, Christiane and Richter, Julia and Rosenwald, Andreas and Szczepanowski, Monika and Schwaenen, Carsten and Stein, Harald and Trautmann, Heiko and Wessendorf, Swen and Trümper, Lorenz and Loeffler, Markus and Spang, Rainer and Kluin, Philip M and Klapper, Wolfram and Siebert, Reiner (2013) Biological characterization of adult MYC-translocation-positive mature B-cell lymphomas other than molecular Burkitt lymphoma. Haematologica 99 (4), pp. 726-735.

Thomas, Anja and Klein, Matthias S. and Stevens, Axel Peter and Reinders, Yvonne and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2013) Changes in the hepatic mitochondrial and membrane proteome in mice fed a non-alcoholic steatohepatitis inducing diet. Journal of proteomics 80, pp. 107-122.

Schif, Birgit and Lennerz, Jochen K. and Kohler, Christian and Bentink, Stefan and Kreuz, Markus and Melzner, Ingo and Ritz, Olga and Trümper, Lorenz and Loeffler, Markus and Spang, Rainer and Möller, Peter (2013) SOCS1 mutation subtypes predict divergent outcomes in diffuse large B-Cell lymphoma (DLBCL) patients. Oncotarget 4 (1), pp. 35-47.

Oefner, Peter J. and Hölzl, Georg and Shen, Peidong and Shpirer, Isaac and Gefel, Dov and Lavi, Tal and Wolf, Eilon and Cohen, Jonathan and Cinnioglu, Cengiz and Underhill, Peter A and Rosenberg, Noah A. and Hochrein, Jochen and Granka, Julie M. and Hillel, Jossi and Feldman, Marcus W. (2013) Genetics and the history of the Samaritans: Y-chromosomal microsatellites and genetic affinity between Samaritans and Cohanim. Human Biology 40.

Seliger, Corinna and Leukel, Petra and Moeckel, Sylvia and Jachnik, Birgit and Lottaz, Claudio and Kreutz, Marina and Brawanski, Alexander and Proescholdt, Martin and Bogdahn, Ulrich and Bosserhoff, Anja-Katrin and Vollmann-Zwerenz, Arabel and Hau, Peter (2013) Lactate-Modulated Induction of THBS-1 Activates Transforming Growth Factor (TGF)-beta2 and Migration of Glioma Cells In Vitro. PloS one 8 (11), e78935.

Kuipers, Jack and Moffa, Giusi (2013) Uniform random generation of large acyclic digraphs. Stats. & Comp..

Lowin, Torsten and Zhu, Wentao and Dettmer-Wilde, Katja and Straub, Rainer H. (2012) Cortisol-mediated adhesion of synovial fibroblasts is dependent on the degradation of anandamide and activation of the endocannabinoid system. Arthritis and rheumatism 64 (12), pp. 3867-3876.

Hochrein, Jochen and Klein, Matthias S. and Zacharias, Helena and Li, Juan and Wijffels, Gene and Schirra, Horst Joachim and Spang, Rainer and Oefner, Peter J. and Gronwald, Wolfram (2012) Performance evaluation of algorithms for the classification of metabolic 1H NMR fingerprints. Journal of proteome research 11 (12), pp. 6242-6251.

Richter, Julia and Schlesner, Matthias and Hoffmann, Steve and Kreuz, Markus and Leich, Ellen and Burkhardt, Birgit and Rosolowski, Maciej and Ammerpohl, Ole and Wagener, Rabea and Bernhart, Stephan H. and Lenze, Dido and Szczepanowski, Monika and Paulsen, Maren and Lipinski, Simone and Russell, Robert B. and Adam-Klages, Sabine and Apic, Gordana and Claviez, Alexander and Hasenclever, Dirk and Hovestadt, Volker and Hornig, Nadine and Korbel, Jan O and Kube, Dieter and Langenberger, David and Lawerenz, Chris and Lisfeld, Jasmin and Meyer, Katharina and Picelli, Simone and Pischimarov, Jordan and Radlwimmer, Bernhard and Rausch, Tobias and Rohde, Marius and Schilhabel, Markus and Scholtysik, René and Spang, Rainer and Trautmann, Heiko and Zenz, Thorsten and Borkhardt, Arndt and Drexler, Hans G. and Möller, Peter and MacLeod, Roderick A. F. and Pott, Christiane and Schreiber, Stefan and Trümper, Lorenz and Loeffler, Markus and Stadler, Peter F. and Lichter, Peter and Eils, Roland and Küppers, Ralf and Hummel, Michael and Klapper, Wolfram and Rosenstiel, Philip and Rosenwald, Andreas and Brors, Benedikt and Siebert, Reiner (2012) Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing. Nature genetics 44 (12), pp. 1316-1320.

Dolnik, Anna and Engelmann, Julia C. and Scharfenberger-Schmeer, Maren and Mauch, Julian and Kelkenberg-Schade, Sabine and Haldemann, Berit and Fries, Tamara and Krönke, Jan and Kühn, Michael W. M. and Paschka, Peter and Kayser, Sabine and Wolf, Stephan and Gaidzik, Verena I. and Schlenk, Richard F. and Rücker, Frank G. and Döhner, Hartmut and Lottaz, Claudio and Döhner, Konstanze and Bullinger, Lars (2012) Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing. Blood 120 (18), e83-e92.

Beier, Christoph P. and Kumar, Praveen and Meyer, Katharina and Leukel, Petra and Bruttel, Valentin and Aschenbrenner, Ines and Riemenschneider, Markus J. and Fragoulis, Athanassios and Rümmele, Petra and Lamszus, Katrin and Schulz, Jörg B. and Weis, Joachim and Bogdahn, Ulrich and Wischhusen, Jörg and Hau, Peter and Spang, Rainer and Beier, Dagmar (2012) The cancer stem cell subtype determines immune infiltration of glioblastoma. Stem Cells and Development 21 (15), pp. 2753-2761.

van der Goot, Annemieke and Zhu, Wentao and Vázquez-Manrique, Rafael and Seinstra, Renée I and Dettmer, Katja and Michels, Helen and Farina, Francesca and Krijnen, Jasper and Melki, Ronald and Buijsman, Rogier C and Ruiz Silva, Mariana and Thijssen, Karen L and Kema, Ido P and Neri, Christian and Oefner, Peter J. and Nollen, Ellen A A (2012) Delaying aging and the aging-associated decline in protein homeostasis by inhibition of tryptophan degradation. Proceedings of the National Academy of Sciences of the United States of America 109 (37), pp. 14912-7.

Escalante-Pérez, María and Jaborsky, Mario and Reinders, Jörg and Kurzai, Oliver and Hedrich, Rainer and Ache, Peter (2012) Poplar extrafloral nectar is protected against plant and human pathogenic fungus. Molecular plant 5 (5), pp. 1157-1159.

Vogelmann, Katja and Drechsel, Gabriele and Bergler, Johannes and Subert, Christa and Philippar, Katrin and Soll, Jürgen and Engelmann, Julia C. and Engelsdorf, Timo and Voll, Lars M. and Hoth, Stefan (2012) Early senescence and cell death in Arabidopsis saul1 mutants involves the PAD4-dependent salicylic acid pathway. Plant physiology 159 (4), pp. 1477-1487.

Schrader, Alexandra and Bentink, Stefan and Spang, Rainer and Lenze, Dido and Hummel, Michael and Kuo, Michael and Arrand, John R and Murray, Paul G and Trümper, Lorenz and Kube, Dieter and Vockerodt, Martina (2012) High Myc activity is an independent negative prognostic factor for diffuse large B cell lymphomas. International journal of cancer 131 (4), E348-E361.

Odoardi, Francesca and Sie, Christopher and Streyl, Kristina and Ulaganathan, Vijay K and Schläger, Christian and Lodygin, Dmitri and Heckelsmiller, Klaus and Nietfeld, Wilfried and Ellwart, Joachim and Klinkert, Wolfgang E F and Lottaz, Claudio and Nosov, Mikhail and Brinkmann, Volker and Spang, Rainer and Lehrach, Hans and Vingron, Martin and Wekerle, Hartmut and Flügel-Koch, Cassandra and Flügel, Alexander (2012) T cells become licensed in the lung to enter the central nervous system. Nature 488 (7413), pp. 675-679.

Hertwig, Falk and Meyer, Katharina and Braun, Sebastian and Ek, Sara and Spang, Rainer and Pfenninger, Cosima V. and Artner, Isabella and Prost, Gaëlle and Chen, Xinbin and Biegel, Jaclyn A. and Judkins, Alexander R. and Englund, Elisabet and Nuber, Ulrike A. (2012) Definition of genetic events directing the development of distinct types of brain tumors from postnatal neural stem/progenitor cells. Cancer research 72 (13), pp. 3381-3392.

Kohl, Stefanie M. and Klein, Matthias S. and Hochrein, Jochen and Oefner, Peter J. and Spang, Rainer and Gronwald, Wolfram (2012) State-of-the art data normalization methods improve NMR-based metabolomic analysis. Metabolomics 8 (Suppl), pp. 146-160.

Mulaw, M. A. and Krause, A. and Krause, A. J. and Deshpande, A. J. and Krause, L. F. and Rouhi, A. and La Starza, R. and Borkhardt, A. and Buske, C. and Mecucci, C. and Ludwig, W.-D. and Lottaz, Claudio and Bohlander, S. K. (2012) CALM/AF10-positive leukemias show upregulation of genes involved in chromatin assembly and DNA repair processes and of genes adjacent to the breakpoint at 10p12. Leukemia 26 (5), pp. 1012-1019.

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

Eckardt, Kai-Uwe and Bärthlein, Barbara and Baid-Agrawal, Seema and Beck, Andreas and Busch, Martin and Eitner, Frank and Ekici, Arif B and Floege, Jürgen and Gefeller, Olaf and Haller, Hermann and Hilge, Robert and Hilgers, Karl F and Kielstein, Jan T and Krane, Vera and Köttgen, Anna and Kronenberg, Florian and Oefner, Peter J. and Prokosch, Hans-Ulrich and Reis, André and Schmid, Matthias and Schaeffner, Elke and Schultheiss, Ulla T and Seuchter, Susanne A and Sitter, Thomas and Sommerer, Claudia and Walz, Gerd and Wanner, Christoph and Wolf, Gunter and Zeier, Martin and Titze, Stephanie (2012) The German Chronic Kidney Disease (GCKD) study: design and methods. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association 27 (4), pp. 1454-1460.

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Almstetter, Martin F. and Oefner, Peter J. and Dettmer, Katja (2012) Comprehensive two-dimensional gas chromatography in metabolomics. Analytical and bioanalytical chemistry 402 (6), pp. 1993-2013.

Klein, Matthias S. and Buttchereit, Nina and Miemczyk, Sebastian P and Immervoll, Ann-Kathrin and Louis, Caridad and Wiedemann, Steffi and Junge, Wolfgang and Thaller, Georg and Oefner, Peter J. and Gronwald, Wolfram (2012) NMR metabolomic analysis of dairy cows reveals milk glycerophosphocholine to phosphocholine ratio as prognostic biomarker for risk of ketosis. Journal of proteome research 11 (2), pp. 1373-1381.

Klapper, Wolfram and Kreuz, Markus and Kohler, Christian and Burkhardt, Birgit and Szczepanowski, Monika and Salaverria, Itziar and Hummel, Michael and Loeffler, Markus and Pellissery, Shoji and Woessmann, Wilhelm and Schwänen, Carsten and Trümper, Lorenz and Wessendorf, Swen and Spang, Rainer and Hasenclever, Dirk and Siebert, Reiner (2012) Patient age at diagnosis is associated with the molecular characteristics of diffuse large B-cell lymphoma. Blood 119 (8), pp. 1882-1887.

Engelmann, Julia C. and Spang, Rainer (2012) A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions. PloS ONE 7 (7), e40634.

Dettmer, Katja and Stevens, Axel Peter and Fagerer, Stephan R and Kaspar, Hannelore and Oefner, Peter J. (2012) Amino acid analysis in physiological samples by GC-MS with propyl chloroformate derivatization and iTRAQ-LC-MS/MS. Methods in molecular biology 828, pp. 165-181.

Dettmer, Katja and Stevens, Axel Peter and Fagerer, Stephan R and Kaspar, Hannelore and Oefner, Peter J. (2012) Amino acid analysis in physiological samples by GC-MS with propyl chloroformate derivatization and iTRAQ-LC-MS/MS. Methods in molecular biology 828, pp. 165-181.

Almstetter, Martin F. and Oefner, Peter J. and Dettmer, Katja (2012) Metabolic fingerprinting using comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Methods in molecular biology 815, pp. 399-411.

Schmidt, Jennifer and Riechers, Alexander and Stoll, Raphael and Amann, Thomas and Fink, Florian and Spruss, Thilo and Gronwald, Wolfram and König, Burkhard and Hellerbrand, Claus and Bosserhoff, Anja Katrin (2012) Targeting melanoma metastasis and immunosuppression with a new mode of melanoma inhibitory activity (MIA) protein inhibition. PloS ONE 7 (5), e37941.

Förster, Frank and Beisser, Daniela and Grohme, Markus A and Liang, Chunguang and Mali, Brahim and Siegl, Alexander Matthias and Engelmann, Julia C. and Shkumatov, Alexander V and Schokraie, Elham and Müller, Tobias and Schnölzer, Martina and Schill, Ralph O and Frohme, Marcus and Dandekar, Thomas (2012) Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations. Bioinformatics and biology insights 6, pp. 69-96.

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

Zhu, Wentao and Stevens, Axel Peter and Dettmer, Katja and Gottfried, Eva and Hoves, Sabine and Kreutz, Marina and Holler, Ernst and Canelas, André B. and Kema, Ido and Oefner, Peter J. (2011) Quantitative profiling of tryptophan metabolites in serum, urine, and cell culture supernatants by liquid chromatography-tandem mass spectrometry. Analytical and bioanalytical chemistry 401 (10), pp. 3249-3261.

Landfried, Karin and Zhu, Wentao and Waldhier, Magdalena Ch. and Schulz, Ute and Ammer, Julia and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Peter, Katrin and Kreutz, Marina and Andreesen, Reinhard and Oefner, Peter J. and Holler, Ernst (2011) Tryptophan catabolism is associated with acute GVHD after human allogeneic stem cell transplantation and indicates activation of indoleamine 2,3-dioxygenase. Blood 118 (26), pp. 6971-6974.

Wachsmuth, Christian and Almstetter, Martin F. and Waldhier, Magdalena Ch. and Gruber, Michael and Nürnberger, Nadine and Oefner, Peter J. and Dettmer, Katja (2011) Performance evaluation of gas chromatography-atmospheric pressure chemical ionization-time-of-flight mass spectrometry for metabolic fingerprinting and profiling. Analytical chemistry 83 (19), pp. 7514-7322.

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Appel, Inka and Gronwald, Wolfram and Spang, Rainer (2011) Estimating classification probabilities in high-dimensional diagnostic studies. Bioinformatics 27 (18), pp. 2563-2570.

Fink, Florian and Hochrein, Jochen and Wolowski, Vincent and Merkl, Rainer and Gronwald, Wolfram (2011) PROCOS: computational analysis of protein-protein complexes. Journal of computational chemistry 32 (12), pp. 2575-2586.

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Maneck, Matthias and Schrader, Alexandra and Kube, Dieter and Spang, Rainer (2011) Genomic data integration using guided clustering. Bioinformatics 27 (16), pp. 2231-2238.

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Salaverria, Itziar and Philipp, Claudia and Oschlies, Ilske and Kohler, Christian and Kreuz, Markus and Szczepanowski, Monika and Burkhardt, Birgit and Trautmann, Heiko and Gesk, Stefan and Andrusiewicz, Miroslaw and Berger, Hilmar and Fey, Miriam and Harder, Lana and Hasenclever, Dirk and Hummel, Michael and Loeffler, Markus and Mahn, Friederike and Martin-Guerrero, Idoia and Pellissery, Shoji and Pott, Christiane and Pfreundschuh, Michael and Reiter, Alfred and Richter, Julia and Rosolowski, Maciej and Schwaenen, Carsten and Stein, Harald and Trümper, Lorenz and Wessendorf, Swen and Spang, Rainer and Küppers, Ralf and Klapper, Wolfram and Siebert, Reiner (2011) Translocations activating IRF4 identify a subtype of germinal center-derived B-cell lymphoma affecting predominantly children and young adults. Blood 118 (1), pp. 139-147.

Gronwald, Wolfram and Klein, Matthias S. and Zeltner, Raoul and Schulze, Bernd-Detlef and Reinhold, Stephan W. and Deutschmann, Markus and Immervoll, Ann-Kathrin and Böger, Carsten A. and Banas, Bernhard and Eckardt, Kai-Uwe and Oefner, Peter J. (2011) Detection of autosomal dominant polycystic kidney disease by NMR spectroscopic fingerprinting of urine. Kidney international 79 (11), pp. 1244-1253.

Klein, Matthias S. and Dorn, Christoph and Saugspier, Michael Sebastian and Hellerbrand, Claus and Oefner, Peter J. and Gronwald, Wolfram (2011) Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics 7 (2), pp. 237-246.

Eberhart, Karin and Rainer, Johannes and Bindreither, Daniel and Ritter, Ireen and Gnaiger, Erich and Kofler, Reinhard and Oefner, Peter J. and Renner, Kathrin (2011) Glucocorticoid-induced alterations in mitochondrial membrane properties and respiration in childhood acute lymphoblastic leukemia. Biochimica et biophysica acta 1807 (6), pp. 719-725.

VerMilyea, Matthew and Maneck, Matthias and Yoshida, Naoko and Blochberger, Isabell and Suzuki, Emi and Suzuki, Toru and Spang, Rainer and Klein, Christoph A. and Perry, Anthony C. F. (2011) Transcriptome asymmetry within mouse zygotes but not between early embryonic sister blastomeres. The EMBO journal 30 (9), pp. 1841-1851.

Jrad-Lamine, Aicha and Henry-Berger, Joelle and Gourbeyre, Pascal and Damon-Soubeyrand, Christelle and Lenoir, Alain and Combaret, Lydie and Saez, Fabrice and Kocer, Ayhan and Tone, Shigenobu and Fuchs, Dietmar and Zhu, Wentao and Oefner, Peter J. and Munn, David H. and Mellor, Andrew L. and Gharbi, Najoua and Cadet, Rémi and Aitken, R. John and Drevet, Joël R. (2011) Deficient tryptophan catabolism along the kynurenine pathway reveals that the epididymis is in a unique tolerogenic state. The Journal of biological chemistry 286 (10), pp. 8030-8042.

Kirovski, Georgi and Stevens, Axel Peter and Czech, Barbara and Dettmer, Katja and Weiss, Thomas S. and Wild, Peter and Hartmann, Arndt and Bosserhoff, Anja-Katrin and Oefner, Peter J. and Hellerbrand, Claus (2011) Down-regulation of methylthioadenosine phosphorylase (MTAP) induces progression of hepatocellular carcinoma via accumulation of 5'-deoxy-5'-methylthioadenosine (MTA). The American journal of pathology 178 (3), pp. 1145-1152.

Dettmer, Katja and Nürnberger, Nadine and Kaspar, Hannelore and Gruber, Michael and Almstetter, Martin F. and Oefner, Peter J. (2011) Metabolite extraction from adherently growing mammalian cells for metabolomics studies: optimization of harvesting and extraction protocols. Analytical and bioanalytical chemistry 399 (3), pp. 1127-1139.

Seitz, Volkhard and Butzhammer, Peter and Hirsch, Burkhard and Hecht, Jochen and Gütgemann, Ines and Ehlers, Anke and Lenze, Dido and Oker, Elisabeth and Sommerfeld, Anke and von der Wall, Edda and König, Christoph and Zinser, Christian and Spang, Rainer and Hummel, Michael (2011) Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma. PLoS One 6 (11), e26837.

Lang, Elmar and Schachtner, R. and Lutter, D. and Herold, Daniela and Kodewitz, A. and Blöchl, FJ and Keck and Theis, Fabian J. and Keck, Ingo R. and Gorriz, J. M. and Gomez-Vilda, P. and Tome, A. M. (2011) Exploratory Matrix Factorization Techniques for Large Scale Biomedical Data Sets. In: UNSPECIFIED Bentham Science Publishers, Hilversum, pp. 26-47. ISBN 978-1-60805-218-9.

Scholtysik, René and Kreuz, Markus and Klapper, Wolfram and Burkhardt, Birgit and Feller, Alfred and Hummel, Michael and Loeffler, Markus and Rosolowski, Maciej and Schwaenen, Carsten and Spang, Rainer and Stein, Harald and Thorns, Christoph and Trümper, Lorenz and Vater, Inga and Wessendorf, Swen and Zenz, Thorsten and Siebert, Reiner and Küppers, Ralf (2010) Detection of genomic aberrations in molecularly defined Burkitt's lymphoma by array-based, high resolution, single nucleotide polymorphism analysis. Haematologica 95 (12), pp. 2047-2055.

Pleiser, Sandra and Rock, Rebecca and Wellmann, Jutta and Gessler, Manfred and Kerkhoff, Eugen (2010) Expression patterns of the mouse Spir-2 actin nucleator. Gene expression patterns 10 (7-8), pp. 345-350.

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

Stevens, Axel Peter and Dettmer, Katja and Kirovski, Georgi and Samejima, Keijiro and Hellerbrand, Claus and Bosserhoff, Anja-Katrin and Oefner, Peter J. (2010) Quantification of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry in cultured tumor cells and liver biopsies. Journal of chromatography A 1217 (19), pp. 3282-3288.

Waldhier, Magdalena Ch. and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2010) Comparison of derivatization and chromatographic methods for GC-MS analysis of amino acid enantiomers in physiological samples. Journal of chromatography B 878 (15-16), pp. 1103-1112.

Klein, Matthias S. and Almstetter, Martin F. and Schlamberger, G. and Nürnberger, Nadine and Dettmer, Katja and Oefner, Peter J. and Meyer, H. H. D. and Wiedemann, Steffi and Gronwald, Wolfram (2010) Nuclear magnetic resonance and mass spectrometry-based milk metabolomics in dairy cows during early and late lactation. Journal of dairy science 93 (4), pp. 1539-1550.

Amann, Thomas and Bataille, Frauke and Spruss, Thilo and Dettmer, Katja and Wild, Peter J. and Liedtke, Christian and Mühlbauer, Marcus and Kiefer, Paul and Oefner, Peter J. and Trautwein, Christian and Bosserhoff, Anja-Katrin and Hellerbrand, Claus (2010) Reduced expression of fibroblast growth factor receptor 2IIIb in hepatocellular carcinoma induces a more aggressive growth. The American journal of pathology 176 (3), pp. 1433-42.

Hundsrucker, Christian and Skroblin, Philipp and Christian, Frank and Zenn, Hans-Michael and Popara, Viola and Joshi, Mangesh and Eichhorst, Jenny and Wiesner, Burkhard and Herberg, Friedrich W and Reif, Bernd and Rosenthal, Walter and Klussmann, Enno (2010) Glycogen synthase kinase 3beta interaction protein functions as an A-kinase anchoring protein. The Journal of biological chemistry 285 (8), pp. 5507-5521.

Neusser, Matthias A. and Lindenmeyer, Maja T. and Moll, Anton G. and Segerer, Stephan and Edenhofer, Ilka and Sen, Kontheari and Stiehl, Daniel P. and Kretzler, Matthias and Gröne, Hermann-Josef and Schlöndorff, Detlef and Cohen, Clemens D. (2010) Human nephrosclerosis triggers a hypoxia-related glomerulopathy. The American journal of pathology 176 (2), pp. 594-607.

Dietl, Katrin and Renner, Kathrin and Dettmer, Katja and Timischl, Birgit and Eberhart, Karin and Dorn, Christoph and Hellerbrand, Claus and Kastenberger, Michael and Kunz-Schughart, Leoni A. and Oefner, Peter J. and Andreesen, Reinhard and Gottfried, Eva and Kreutz, Marina (2010) Lactic acid and acidification inhibit TNF secretion and glycolysis of human monocytes. Journal of immunology 184 (3), pp. 1200-1209.

Ingersoll, Molly A. and Spanbroek, Rainer and Lottaz, Claudio and Gautier, Emmanuel L. and Frankenberger, Marion and Hoffmann, Reinhard and Lang, Roland and Haniffa, Muzlifah and Collin, Matthew and Tacke, Frank and Habenicht, Andreas .J R. and Ziegler-Heitbrock, Loems and Randolph, Gwendalyn J. (2010) Comparison of gene expression profiles between human and mouse monocyte subsets. Blood 115 (3), e10-e19.

Gronwald, Wolfram and Kalbitzer, Hans Robert (2010) Automated protein NMR structure determination in solution. Methods in molecular biology 673, pp. 95-127.

Lottaz, Claudio and Beier, Dagmar and Meyer, Katharina and Kumar, Praveen and Hermann, Andreas and Schwarz, Johannes and Junker, Markus and Oefner, Peter J. and Bogdahn, Ulrich and Wischhusen, J and Spang, Rainer and Storch, Alexander and Beier, Christoph P. (2010) Transcriptional profiles of CD133+ and CD133- glioblastoma-derived cancer stem cell lines suggest different cells of origin. Cancer research 70 (5), pp. 2030-2040.

Thieme, Marian and Lottaz, Claudio and Niederstätter, Harald and Parson, Walther and Spang, Rainer and Oefner, Peter J. (2009) ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly. BMC bioinformatics 10, p. 440.

Geue, Lutz and Klare, Sabrina and Schnick, Christina and Mintel, Birgit and Meyer, Katharina and Conraths, Franz J. (2009) Analysis of the clonal relationship of serotype O26:H11 enterohemorrhagic Escherichia coli isolates from cattle. Applied and environmental microbiology 75 (21), pp. 6947-6953.

Filatova, Alina and Leyerer, Marina and Gorboulev, Valentin and Chintalapati, Chakravarthi and Reinders, Yvonne and Müller, Thomas D. and Srinivasan, Aruna and Hübner, Stefan and Koepsell, Hermann (2009) Novel shuttling domain in a regulator (RSC1A1) of transporter SGLT1 steers cell cycle-dependent nuclear location. Traffic 10 (11), pp. 1599-1618.

Tavtigian, Sean V. and Oefner, Peter J. and Babikyan, Davit and Hartmann, Anne and Healey, Sue and Le Calvez-Kelm, Florence and Lesueur, Fabienne and Byrnes, Graham B. and Chuang, Shu-Chun and Forey, Nathalie and Feuchtinger, Corinna and Gioia, Lydie and Hall, Janet and Hashibe, Mia and Herte, Barbara and McKay-Chopin, Sandrine and Thomas, Alun and Vallée, Maxime P. and Voegele, Catherine and Webb, Penelope M. and Whiteman, David C. and Sangrajrang, Suleeporn and Hopper, John L. and Southey, Melissa C. and Andrulis, Irene L. and John, Esther M. and Chenevix-Trench, Georgia (2009) Rare, evolutionarily unlikely missense substitutions in ATM confer increased risk of breast cancer. American journal of human genetics 85 (4), pp. 427-446.

Förster, Frank and Liang, Chunguang and Shkumatov, Alexander V. and Beisser, Daniela and Engelmann, Julia C. and Schnölzer, Martina and Frohme, Marcus and Müller, Tobias and Schill, Ralph O. and Dandekar, Thomas (2009) Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC genomics 10, p. 469.

Lee, Chil-Woo and Efetova, Marina and Engelmann, Julia C. and Kramell, Robert and Wasternack, Claus and Ludwig-Müller, Jutta and Hedrich, Rainer and Deeken, Rosalia (2009) Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana. The Plant cell 21 (9), pp. 2948-2962.

Lyck, Ruth and Ruderisch, Nadine and Moll, Anton G. and Steiner, Oliver and Cohen, Clemens D. and Engelhardt, Britta and Makrides, Victoria and Verrey, Francois (2009) Culture-induced changes in blood-brain barrier transcriptome: implications for amino-acid transporters in vivo. Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 29 (9), pp. 1491-1502.

Allam, Ramanjaneyulu and Lichtnekert, Julia and Moll, Anton G. and Taubitz, Anela and Vielhauer, Volker and Anders, Hans-Joachim (2009) Viral RNA and DNA trigger common antiviral responses in mesangial cells. Journal of the American Society of Nephrology : JASN 20 (9), pp. 1986-1996.

Almstetter, Martin F. and Appel, Inka and Gruber, Michael and Lottaz, Claudio and Timischl, Birgit and Spang, Rainer and Dettmer, Katja and Oefner, Peter J. (2009) Integrative normalization and comparative analysis for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Analytical chemistry 81 (14), pp. 5731-5739.

Kaspar, Hannelore and Dettmer, Katja and Chan, Queenie and Daniels, Scott and Nimkar, Subodh and Daviglus, Martha L. and Stamler, Jeremiah and Elliott, Paul and Oefner, Peter J. (2009) Urinary amino acid analysis: a comparison of iTRAQ-LC-MS/MS, GC-MS, and amino acid analyzer. Journal of chromatography B 877 (20-21), pp. 1838-1846.

Gimmler, Jens and Gronwald, Wolfram and Möller, Heiko M. and Exner, Thomas E. (2009) Protein structure calculation with a max-min ant system. Chemistry Central Journal 3 (Supl I), P52.

Waldhier, Magdalena Ch. and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2009) Capillary electrophoresis and column chromatography in biomedical chiral amino acid analysis. Analytical and bioanalytical chemistry 394 (3), pp. 695-706.

Voss, Katrin and Stahl, Sonja and Hogan, Benjamin M. and Reinders, Jörg and Schleider, Elisa and Schulte-Merker, Stefan and Felbor, Ute (2009) Functional analyses of human and zebrafish 18-amino acid in-frame deletion pave the way for domain mapping of the cerebral cavernous malformation 3 protein. Human mutation 30 (6), pp. 1003-1011.

Baskaran, Kumaran and Kirchhöfer, Renate and Huber, Fritz and Trenner, Jochen and Brunner, Konrad and Gronwald, Wolfram and Neidig, Klaus-Peter and Kalbitzer, Hans Robert (2009) Chemical shift optimization in multidimensional NMR spectra by AUREMOL-SHIFTOPT. Journal of biomolecular NMR 43 (4), pp. 197-210.

Amann, Thomas and Maegdefrau, Ulrike and Hartmann, Arndt and Agaimy, Abbas and Marienhagen, Jörg and Weiss, Thomas S. and Stoeltzing, Oliver and Warnecke, Christina and Schölmerich, Jürgen and Oefner, Peter J. and Kreutz, Marina and Bosserhoff, Anja-Katrin and Hellerbrand, Claus (2009) GLUT1 expression is increased in hepatocellular carcinoma and promotes tumorigenesis. The American journal of pathology 174 (4), pp. 1544-1552.

Vlad, Marcel O. and Corlan, Alexandru D. and Morán, Federico and Spang, Rainer and Oefner, Peter J. and Ross, John (2009) Kinetic laws, phase-phase expansions, renormalization group, and INR calibration. Proceedings of the National Academy of Sciences of the United States of America 106 (16), pp. 6465-6470.

Kaput, Jim and Cotton, Richard G. H. and Hardman, Lauren and Watson, Michael and Al Aqeel, Aida I. and Al-Aama, Jumana Y. and Al-Mulla, Fahd and Alonso, Santos and Aretz, Stefan and Auerbach, Arleen D. and Bapat, Bharati and Bernstein, Inge T. and Bhak, Jong and Bleoo, Stacey L. and Blöcker, Helmut and Brenner, Steven E. and Burn, John and Bustamante, Mariona and Calzone, Rita and Cambon-Thomsen, Anne and Cargill, Michele and Carrera, Paola and Cavedon, Lawrence and Cho, Yoon Shin and Chung, Yeun-Jun and Claustres, Mireille and Cutting, Garry and Dalgleish, Raymond and den Dunnen, Johan T. and Díaz, Carlos and Dobrowolski, Steven and dos Santos, M. Rosário N. and Ekong, Rosemary and Flanagan, Simon B. and Flicek, Paul and Furukawa, Yoichi and Genuardi, Maurizio and Ghang, Ho and Golubenko, Maria V. and Greenblatt, Marc S. and Hamosh, Ada and Hancock, John M. and Hardison, Ross and Harrison, Terence M. and Hoffmann, Robert and Horaitis, Rania and Howard, Heather J. and Barash, Carol Isaacson and Izagirre, Neskuts and Jung, Jongsun and Kojima, Toshio and Laradi, Sandrine and Lee, Yeon-Su and Lee, Jong-Young and Gil-da-Silva-Lopes, Vera L. and Macrae, Finlay A. and Maglott, Donna and Marafie, Makia J. and Marsh, Steven G. E. and Matsubara, Yoichi and Messiaen, Ludwine M. and Möslein, Gabriela and Netea, Mihai G. and Norton, Melissa L. and Oefner, Peter J. and Oetting, William S. and O'Leary, James C. and de Ramirez, Ana Maria Oller and Paalman, Mark H. and Parboosingh, Jillian and Patrinos, George P. and Perozzi, Giuditta and Phillips, Ian R. and Povey, Sue and Prasad, Suyash and Qi, Ming and Quin, David J. and Ramesar, Rajkumar S. and Richards, C Sue and Savige, Judith and Scheible, Dagmar G. and Scott, Rodney J. and Seminara, Daniela and Shephard, Elizabeth A. and Sijmons, Rolf H. and Smith, Timothy D. and Sobrido, María-Jesús and Tanaka, Toshihiro and Tavtigian, Sean V. and Taylor, Graham R. and Teague, Jon and Töpel, Thoralf and Ullman-Cullere, Mollie and Utsunomiya, Joji and van Kranen, Henk J. and Vihinen, Mauno and Webb, Elizabeth and Weber, Thomas K. and Yeager, Meredith and Yeom, Young I. and Yim, Seon-Hee and Yoo, Hyang-Sook (2009) Planning the human variome project: the Spain report. Human mutation 30 (4), pp. 496-510.

Fink, Florian and Ederer, Stephan and Gronwald, Wolfram (2009) Protein-Protein Interaction Analysis by Docking. Algorithms 2 (1), pp. 429-436.

Anchang, Benedict Nchang and Sadeh, Mohammad Javad and Jacob, Juby and Tresch, Achim and Vlad, Marcel O. and Oefner, Peter J. and Spang, Rainer (2009) Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models. Proceedings of the National Academy of Sciences of the United States of America 106 (16), pp. 6447-6452.

Martín-Subero, José I. and Kreuz, Markus and Bibikova, Marina and Bentink, Stefan and Ammerpohl, Ole and Wickham-Garcia, Eliza and Rosolowski, Maciej and Richter, Julia and Lopez-Serra, Lidia and Ballestar, Esteban and Berger, Hilmar and Agirre, Xabier and Bernd, Heinz-Wolfram and Calvanese, Vincenzo and Cogliatti, Sergio B. and Drexler, Hans G. and Fan, Jian-Bing and Fraga, Mario F. and Hansmann, Martin L. and Hummel, Michael and Klapper, Wolfram and Korn, Bernhard and Küppers, Ralf and Macleod, Roderick A. F. and Möller, Peter and Ott, German and Pott, Christiane and Prosper, Felipe and Rosenwald, Andreas and Schwaenen, Carsten and Schübeler, Dirk and Seifert, Marc and Stürzenhofecker, Benjamin and Weber, Michael and Wessendorf, Swen and Loeffler, Markus and Trümper, Lorenz and Stein, Harald and Spang, Rainer and Esteller, Manel and Barker, David and Hasenclever, Dirk and Siebert, Reiner (2009) New insights into the biology and origin of mature aggressive B-cell lymphomas by combined epigenomic, genomic, and transcriptional profiling. Blood 113 (11), pp. 2488-2497.

Stevens, Axel Peter and Spangler, Barbara and Wallner, Susanne and Kreutz, Marina and Dettmer, Katja and Oefner, Peter J. and Bosserhoff, Anja-Katrin (2009) Direct and tumor microenvironment mediated influences of 5'-deoxy-5'-(methylthio)adenosine on tumor progression of malignant melanoma. Journal of cellular biochemistry 106 (2), pp. 210-219.

Schmid, Markus B and Fleischmann, Matthias and D'Elia, Valerio and Reiser, Oliver and Gronwald, Wolfram and Gschwind, Ruth M. (2009) Residual dipolar couplings in short peptidic foldamers: combined analyses of backbone and side-chain conformations and evaluation of structure coordinates of rigid unnatural amino acids. Chembiochem 10 (3), pp. 440-444.

Kaspar, Hannelore and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. (2009) Advances in amino acid analysis. Analytical and bioanalytical chemistry 393 (2), pp. 445-452.

Schwaenen, Carsten and Viardot, Andreas and Berger, Hilmar and Barth, Thomas F. E. and Bentink, Stefa and Döhner, Hartmut and Enz, Martina and Feller, Alfred C. and Hansmann, Martin-Leo and Hummel, Michael and Kestler, Hans A and Klapper, Wolfram and Kreuz, Markus and Lenze, Dido and Loeffler, Markus and Möller, Peter and Müller-Hermelink, Hans-Konrad and Ott, German and Rosolowski, Maciej and Rosenwald, Andreas and Ruf, Sandra and Siebert, Reiner and Spang, Rainer and Stein, Harald and Truemper, Lorenz and Lichter, Peter and Bentz, Martin and Wessendorf, Swen (2009) Microarray-based genomic profiling reveals novel genomic aberrations in follicular lymphoma which associate with patient survival and gene expression status. Genes, Chromosomes and Cancer 48 (1), pp. 39-54.

Engelmann, Julia C. and Rahmann, Sven and Wolf, Matthias and Schultz, Jörg and Fritzilas, Epameinondas and Kneitz, Susanne and Dandekar, Thomas and Müller, Tobias (2009) Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular ecology resources 9 (1), pp. 83-93.

Fischer, Andreas and Baljuls, Angela and Reinders, Jörg and Nekhoroshkova, Elena and Sibilski, Claudia and Metz, Renate and Albert, Stefan and Rajalingam, Krishnaraj and Hekman, Mirko and Rapp, Ulf R. (2009) Regulation of RAF activity by 14-3-3 proteins: RAF kinases associate functionally with both homo- and heterodimeric forms of 14-3-3 proteins. The Journal of biological chemistry 284 (5), pp. 3183-3194.

Hartmann, Anne and Thieme, Marian and Nanduri, Lahiri K and Stempfl, Thomas and Moehle, Christoph and Kivisild, Toomas and Oefner, Peter J. (2009) Validation of microarray-based resequencing of 93 worldwide mitochondrial genomes. Human mutation 30 (1), pp. 115-122.

Baumann, Fusun and Leukel, Petra and Doerfelt, Anett and Beier, Christoph P. and Dettmer, Katja and Oefner, Peter J. and Kastenberger, Michael and Kreutz, Marina and Nickl-Jockschat, Thomas and Bogdahn, Ulrich and Bosserhoff, Anja-Katrin and Hau, Peter (2009) Lactate promotes glioma migration by TGF-beta2-dependent regulation of matrix metalloproteinase-2. Neuro-oncology 11 (4), pp. 368-380.

Moll, Anton G. and Lindenmeyer, Maja T. and Kretzler, Matthias and Nelson, Peter J. and Zimmer, Ralf and Cohen, Clemens D. (2009) Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays. PloS ONE 4 (3), e4702.

Blenk, Steffen and Engelmann, Julia C. and Pinkert, Stefan and Weniger, Markus and Schultz, Jörg and Rosenwald, Andreas and Müller-Hermelink, Hans K and Müller, Tobias and Dandekar, Thomas (2008) Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis. BMC cancer 8, p. 106.

Montesinos-Rongen, M, and Brunn, A, and Bentink, Stefan and Basso, K, and Lim, W, K, and Klapper, Wolfram and Schaller, C, and Reifenberger, G, and Rubenstein, J, and Wiestler, O, D, and Spang, Rainer and Dalla-Favera, R, and Siebert, Reiner and Deckert, M, (2008) Gene expression profiling suggests primary central nervous system lymphomas to be derived from a late germinal center B cell. Leukemia 22 (2), pp. 400-405.

Roesch, Alexander and Becker, Bernd and Bentink, Stefan and Spang, Rainer and Vogl, Annegret and Hagen, Ilja and Landthaler, Michael and Vogt, Thomas (2007) Ataxia telangiectasia-mutated gene is a possible biomarker for discrimination of infiltrative deep penetrating nevi and metastatic vertical growth phase melanoma. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Prevention 16 (11), pp. 2486-2490.

Lottaz, Claudio and Toedling, Joern and Spang, Rainer (2007) Annotation-based distance measures for patient subgroup discovery in clinical microarray studies. Bioinformatics 23 (17), pp. 2256-2264.

Markowetz, Florian and Spang, Rainer (2007) Inferring cellular networks - a review. BMC bioinformatics 8 Suppl 6, S5.

Rhein, P. and Scheid, S. and Ratei, R. and Hagemeier, C. and Seeger, K. and Kirschner-Schwabe, R. and Moericke, A. and Schrappe, M. and Spang, Rainer and Ludwig, W.-D. and Karawajew, L. (2007) Gene expression shift towards normal B cells, decreased proliferative capacity and distinct surface receptors characterize leukemic blasts persisting during induction therapy in childhood acute lymphoblastic leukemia. Leukemia 21 (5), pp. 897-905.

Jaeger, Jochen and Koczan, Dirk and Thiesen, Hans-Juergen and Ibrahim, Saleh M. and Gross, Gerd and Spang, Rainer and Kunz, Manfred (2007) Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues. Clinical cancer research 13 (3), pp. 806-815.

This list was generated on Sat Nov 22 16:34:16 2014 CET.
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