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3D protein structures 5’-Deoxy-5’-methylthioadenosine (MTA) Acute kidney injury (AKI) AGO2 alignment Animal proteomics AP-1 apoptosis Arabidopsis Bayesian network learning BGe score bioinformatics bioninformatics Blood plasma BRCA1 BRCA2 Breast cancer risk c-Jun Cancer CDH2 cJun Classification Clinical allogeneic transplantation Comprehensive two-dimensional gas chromatography electron ionization time-of-flight mass spectrometry (GC×GC-EI-TOFMS) computer program Crohn's Disease dairy cows data mining Datenauswertung dendritic cell diclofenac DLBCL Docking EF-1A Enantioselective analysis Fatty acid methyl esters Fingerprinting Flüssigchromatographie-Tandemmassenspektrometrie Gas Chromatographie Gas chromatography gas chromatography−mass spectrometry Gaussian DAG models GC × GC–TOFMS GC-MS genetic association study glioma glucose GVHD HADDOCK Hereditary breast and ovarian cancer heterogeneity hidden variables hnRNP K IFN Immune Regulation Ionic liquid columns lactate LDH-A lifestyle factors liquid chromatography-tandem mass spectrometry Liver proteome Lymphoma major facilitator superfamily malignant melanoma MAP 3-kinase MAPK/ERK signalling Mass spectrometry Massenspektrometrie Melanoma metabolic fingerprinting metabolic syndrome metabolite profiling metabolites metabolomics Metabolomics GC-MS Adherent cells Detachment Extraction Amino acids Metabolomik Metagenomics Methionin- und Polyaminstoffwechselwege methionine and polyamine pathways methods Methyl chloroformate Methylthioadenosine methythioadenosine phosphorylase (MTAP) microarray Microbiome milk milk metabolomics miRNA NAFLD NASH Network reconstruction NMR NMR spectroscopy Nonalcoholic fatty liver disease Nonalcoholic steatohepatitis nuclear magnetic resonance Organic acids ovarian cancer Penetrance of BRCA2 plasma preneoplastic changes Primary cells PRMT PROCOS profiling prophylactic salpingo-oophorectomy Protein arginine methylation protein-protein docking protein-protein-complexes quantification Raf kinases regulatory T cell Retention crossover RNAi rs11564299 scoring Serum shRNA signal transduction siRNA SOCS1 mutation Spike-in experiment Stat3 statistical data analysis TLR transport Tumor cells Two-dimensional differential in-gel electrophoresis ubiquitin Ulcerative Colitis Umfassende 2-dimensionale Gas Chromatographie gekoppelt mit der Flugzeitmassenspektrometrie Urine vacuole verification of protein interactions
Number of items at this level: 165.

3D protein structures

Fink, Florian and Ederer, Stephan and Gronwald, Wolfram (2009) Protein-Protein Interaction Analysis by Docking. Algorithms 2 (1), pp. 429-436.

5’-Deoxy-5’-methylthioadenosine (MTA)

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Acute kidney injury (AKI)

Zacharias, Helena and Schley, Gunnar and Hochrein, Jochen and Klein, Matthias S. and Köberle, Carmen and Eckardt, Kai-Uwe and Willam, Carsten and Oefner, Peter J. and Gronwald, Wolfram (2013) Analysis of human urine reveals metabolic changes related to the development of acute kidney injury following cardiac surgery. Metabolomics 9 (3), pp. 697-707.

AGO2

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

alignment

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Animal proteomics

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

AP-1

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

apoptosis

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

Arabidopsis

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

Bayesian network learning

Kuipers, Jack and Moffa, Giusi and Heckerman, David (2014) Addendum on the scoring of Gaussian directed acyclic graphical models. Annals of Statistics. (In Press)

BGe score

Kuipers, Jack and Moffa, Giusi and Heckerman, David (2014) Addendum on the scoring of Gaussian directed acyclic graphical models. Annals of Statistics. (In Press)

bioinformatics

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

bioninformatics

Meyer, Katharina (2013) Dissolving heterogeneity in cancer. PhD, Universität Regensburg

Blood plasma

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

BRCA1

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

BRCA2

Tea, Muy-Kheng M. and Kroiss, Regina and Muhr, Daniela and Fuerhauser-Rappaport, Christine and Oefner, Peter J. and Wagner, Teresa M and Singer, Christian F. (2013) Central European BRCA2 mutation carriers: Birth cohort status correlates with onset of breast cancer. Maturitas.

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

Breast cancer risk

Tea, Muy-Kheng M. and Kroiss, Regina and Muhr, Daniela and Fuerhauser-Rappaport, Christine and Oefner, Peter J. and Wagner, Teresa M and Singer, Christian F. (2013) Central European BRCA2 mutation carriers: Birth cohort status correlates with onset of breast cancer. Maturitas.

c-Jun

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

Cancer

Meyer, Katharina (2013) Dissolving heterogeneity in cancer. PhD, Universität Regensburg

CDH2

Ruedel, Anke and Stark, Klaus and Kaufmann, Simone and Bauer, Richard and Reinders, Jörg and Rovensky, Jozef and Blazicková, Stanislava and Oefner, Peter J. and Bosserhoff, Anja Katrin (2014) N-cadherin promoter polymorphisms and risk of osteoarthritis. FASEB journal 28 (2), pp. 683-691.

cJun

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

Classification

Zacharias, Helena and Schley, Gunnar and Hochrein, Jochen and Klein, Matthias S. and Köberle, Carmen and Eckardt, Kai-Uwe and Willam, Carsten and Oefner, Peter J. and Gronwald, Wolfram (2013) Analysis of human urine reveals metabolic changes related to the development of acute kidney injury following cardiac surgery. Metabolomics 9 (3), pp. 697-707.

Clinical allogeneic transplantation

Holler, Ernst and Butzhammer, Peter and Schmid, Karin and Hundsrucker, Christian and Koestler, Josef and Peter, Katrin and Zhu, Wentao and Sporrer, Daniela and Hehlgans, Thomas and Kreutz, Marina and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Andreesen, Reinhard and Levine, John E. and Ferrara, James L and Gessner, Andre and Spang, Rainer and Oefner, Peter J. (2014) Metagenomic analysis of the stool microbiome in patients receiving allogeneic SCT: Loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal GvHD. Biology of Blood and Marrow Transplantation 20 (5), pp. 640-645.

Comprehensive two-dimensional gas chromatography electron ionization time-of-flight mass spectrometry (GC×GC-EI-TOFMS)

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

computer program

Klein, Matthias S. and Oefner, Peter J. and Gronwald, Wolfram (2013) MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D (1)H and (1)H-(13)C HSQC NMR spectra. BioTechniques 54 (5), pp. 251-256.

Crohn's Disease

Vossenkämper, Anna and Hundsrucker, Christian and Page, Kevin and van Maurik, Andre and Sanders, Theodore J. and Stagg, Andrew J. and Das, Lisa and MacDonald, Thomas T. (2014) A CD3-Specific Antibody Reduces Cytokine Production and Alters Phosphoprotein Profiles in Intestinal Tissues From Patients With Inflammatory Bowel Disease. The American Journal of Gastroenterology 147 (1), pp. 172-183.

dairy cows

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

data mining

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Datenauswertung

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

dendritic cell

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

diclofenac

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

DLBCL

Schif, Birgit and Lennerz, Jochen K. and Kohler, Christian and Bentink, Stefan and Kreuz, Markus and Melzner, Ingo and Ritz, Olga and Trümper, Lorenz and Loeffler, Markus and Spang, Rainer and Möller, Peter (2013) SOCS1 mutation subtypes predict divergent outcomes in diffuse large B-Cell lymphoma (DLBCL) patients. Oncotarget 4 (1), pp. 35-47.

Docking

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

EF-1A

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

Enantioselective analysis

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Fatty acid methyl esters

Dettmer, Katja (2014) Assessment of ionic liquid stationary phases for the GC analysis of fatty acid methyl esters. Analytical and Bioanalytical Chemistry 406, pp. 4931-4939.

Fingerprinting

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

Flüssigchromatographie-Tandemmassenspektrometrie

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Gas Chromatographie

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Gas chromatography

Dettmer, Katja (2014) Assessment of ionic liquid stationary phases for the GC analysis of fatty acid methyl esters. Analytical and Bioanalytical Chemistry 406, pp. 4931-4939.

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

gas chromatography−mass spectrometry

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

Gaussian DAG models

Kuipers, Jack and Moffa, Giusi and Heckerman, David (2014) Addendum on the scoring of Gaussian directed acyclic graphical models. Annals of Statistics. (In Press)

GC × GC–TOFMS

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

GC-MS

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

genetic association study

Ruedel, Anke and Stark, Klaus and Kaufmann, Simone and Bauer, Richard and Reinders, Jörg and Rovensky, Jozef and Blazicková, Stanislava and Oefner, Peter J. and Bosserhoff, Anja Katrin (2014) N-cadherin promoter polymorphisms and risk of osteoarthritis. FASEB journal 28 (2), pp. 683-691.

glioma

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

glucose

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

GVHD

Holler, Ernst and Butzhammer, Peter and Schmid, Karin and Hundsrucker, Christian and Koestler, Josef and Peter, Katrin and Zhu, Wentao and Sporrer, Daniela and Hehlgans, Thomas and Kreutz, Marina and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Andreesen, Reinhard and Levine, John E. and Ferrara, James L and Gessner, Andre and Spang, Rainer and Oefner, Peter J. (2014) Metagenomic analysis of the stool microbiome in patients receiving allogeneic SCT: Loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal GvHD. Biology of Blood and Marrow Transplantation 20 (5), pp. 640-645.

HADDOCK

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

Hereditary breast and ovarian cancer

Tea, Muy-Kheng M. and Kroiss, Regina and Muhr, Daniela and Fuerhauser-Rappaport, Christine and Oefner, Peter J. and Wagner, Teresa M and Singer, Christian F. (2013) Central European BRCA2 mutation carriers: Birth cohort status correlates with onset of breast cancer. Maturitas.

heterogeneity

Meyer, Katharina (2013) Dissolving heterogeneity in cancer. PhD, Universität Regensburg

hidden variables

Sadeh, Mohammad Javad (2013) Considering unknown unknown: reconstruction of non-confoundable causal relations in biological networks. PhD, Universität Regensburg

hnRNP K

Ruedel, Anke and Stark, Klaus and Kaufmann, Simone and Bauer, Richard and Reinders, Jörg and Rovensky, Jozef and Blazicková, Stanislava and Oefner, Peter J. and Bosserhoff, Anja Katrin (2014) N-cadherin promoter polymorphisms and risk of osteoarthritis. FASEB journal 28 (2), pp. 683-691.

IFN

Vossenkämper, Anna and Hundsrucker, Christian and Page, Kevin and van Maurik, Andre and Sanders, Theodore J. and Stagg, Andrew J. and Das, Lisa and MacDonald, Thomas T. (2014) A CD3-Specific Antibody Reduces Cytokine Production and Alters Phosphoprotein Profiles in Intestinal Tissues From Patients With Inflammatory Bowel Disease. The American Journal of Gastroenterology 147 (1), pp. 172-183.

Immune Regulation

Vossenkämper, Anna and Hundsrucker, Christian and Page, Kevin and van Maurik, Andre and Sanders, Theodore J. and Stagg, Andrew J. and Das, Lisa and MacDonald, Thomas T. (2014) A CD3-Specific Antibody Reduces Cytokine Production and Alters Phosphoprotein Profiles in Intestinal Tissues From Patients With Inflammatory Bowel Disease. The American Journal of Gastroenterology 147 (1), pp. 172-183.

Ionic liquid columns

Dettmer, Katja (2014) Assessment of ionic liquid stationary phases for the GC analysis of fatty acid methyl esters. Analytical and Bioanalytical Chemistry 406, pp. 4931-4939.

lactate

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

LDH-A

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

lifestyle factors

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

liquid chromatography-tandem mass spectrometry

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Liver proteome

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

Lymphoma

Schif, Birgit and Lennerz, Jochen K. and Kohler, Christian and Bentink, Stefan and Kreuz, Markus and Melzner, Ingo and Ritz, Olga and Trümper, Lorenz and Loeffler, Markus and Spang, Rainer and Möller, Peter (2013) SOCS1 mutation subtypes predict divergent outcomes in diffuse large B-Cell lymphoma (DLBCL) patients. Oncotarget 4 (1), pp. 35-47.

major facilitator superfamily

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

malignant melanoma

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

MAP 3-kinase

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

MAPK/ERK signalling

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

Mass spectrometry

Dettmer, Katja and Vogl, Franziska C. and Ritter, Axel P. and Zhu, Wentao and Nürnberger, Nadine and Kreutz, Marina and Oefner, Peter J. and Gronwald, Wolfram and Gottfried, Eva (2013) Distinct metabolic differences between various human cancer and primary cells. ELECTROPHORESIS 34 (19), pp. 2836-2847.

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Klein, Matthias S. and Almstetter, Martin F. and Schlamberger, G. and Nürnberger, Nadine and Dettmer, Katja and Oefner, Peter J. and Meyer, H. H. D. and Wiedemann, Steffi and Gronwald, Wolfram (2010) Nuclear magnetic resonance and mass spectrometry-based milk metabolomics in dairy cows during early and late lactation. Journal of dairy science 93 (4), pp. 1539-1550.

Massenspektrometrie

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Melanoma

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

metabolic fingerprinting

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

metabolic syndrome

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

metabolite profiling

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

metabolites

Klein, Matthias S. and Oefner, Peter J. and Gronwald, Wolfram (2013) MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D (1)H and (1)H-(13)C HSQC NMR spectra. BioTechniques 54 (5), pp. 251-256.

metabolomics

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

Dettmer, Katja and Vogl, Franziska C. and Ritter, Axel P. and Zhu, Wentao and Nürnberger, Nadine and Kreutz, Marina and Oefner, Peter J. and Gronwald, Wolfram and Gottfried, Eva (2013) Distinct metabolic differences between various human cancer and primary cells. ELECTROPHORESIS 34 (19), pp. 2836-2847.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

Zacharias, Helena and Schley, Gunnar and Hochrein, Jochen and Klein, Matthias S. and Köberle, Carmen and Eckardt, Kai-Uwe and Willam, Carsten and Oefner, Peter J. and Gronwald, Wolfram (2013) Analysis of human urine reveals metabolic changes related to the development of acute kidney injury following cardiac surgery. Metabolomics 9 (3), pp. 697-707.

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Klein, Matthias S. and Dorn, Christoph and Saugspier, Michael Sebastian and Hellerbrand, Claus and Oefner, Peter J. and Gronwald, Wolfram (2011) Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics 7 (2), pp. 237-246.

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

Metabolomics GC-MS Adherent cells Detachment Extraction Amino acids

Dettmer, Katja and Nürnberger, Nadine and Kaspar, Hannelore and Gruber, Michael and Almstetter, Martin F. and Oefner, Peter J. (2011) Metabolite extraction from adherently growing mammalian cells for metabolomics studies: optimization of harvesting and extraction protocols. Analytical and bioanalytical chemistry 399 (3), pp. 1127-1139.

Metabolomik

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Metagenomics

Holler, Ernst and Butzhammer, Peter and Schmid, Karin and Hundsrucker, Christian and Koestler, Josef and Peter, Katrin and Zhu, Wentao and Sporrer, Daniela and Hehlgans, Thomas and Kreutz, Marina and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Andreesen, Reinhard and Levine, John E. and Ferrara, James L and Gessner, Andre and Spang, Rainer and Oefner, Peter J. (2014) Metagenomic analysis of the stool microbiome in patients receiving allogeneic SCT: Loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal GvHD. Biology of Blood and Marrow Transplantation 20 (5), pp. 640-645.

Methionin- und Polyaminstoffwechselwege

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

methionine and polyamine pathways

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

methods

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Methyl chloroformate

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Methylthioadenosine

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

methythioadenosine phosphorylase (MTAP)

Stevens, Axel Peter (2011) Analysis of intermediates of the methionine and polyamine metabolism by liquid chromatography-tandem mass spectrometry. PhD, Universität Regensburg

microarray

Meyer, Katharina (2013) Dissolving heterogeneity in cancer. PhD, Universität Regensburg

Microbiome

Holler, Ernst and Butzhammer, Peter and Schmid, Karin and Hundsrucker, Christian and Koestler, Josef and Peter, Katrin and Zhu, Wentao and Sporrer, Daniela and Hehlgans, Thomas and Kreutz, Marina and Holler, Barbara and Wolff, Daniel and Edinger, Matthias and Andreesen, Reinhard and Levine, John E. and Ferrara, James L and Gessner, Andre and Spang, Rainer and Oefner, Peter J. (2014) Metagenomic analysis of the stool microbiome in patients receiving allogeneic SCT: Loss of diversity is associated with use of systemic antibiotics and more pronounced in gastrointestinal GvHD. Biology of Blood and Marrow Transplantation 20 (5), pp. 640-645.

milk

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

milk metabolomics

Klein, Matthias S. and Almstetter, Martin F. and Schlamberger, G. and Nürnberger, Nadine and Dettmer, Katja and Oefner, Peter J. and Meyer, H. H. D. and Wiedemann, Steffi and Gronwald, Wolfram (2010) Nuclear magnetic resonance and mass spectrometry-based milk metabolomics in dairy cows during early and late lactation. Journal of dairy science 93 (4), pp. 1539-1550.

miRNA

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

NAFLD

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

NASH

Dorn, Christoph and Engelmann, Julia C. and Saugspier, Michael Sebastian and Koch, Andreas and Hartmann, Arndt and Spang, Rainer and Bosserhoff, Anja Katrin and Hellerbrand, Claus (2014) Increased expression of c-Jun in nonalcoholic fatty liver disease. Laboratory Investigation 94, pp. 394-408.

Network reconstruction

Sadeh, Mohammad Javad (2013) Considering unknown unknown: reconstruction of non-confoundable causal relations in biological networks. PhD, Universität Regensburg

NMR

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

Klein, Matthias S. and Oefner, Peter J. and Gronwald, Wolfram (2013) MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D (1)H and (1)H-(13)C HSQC NMR spectra. BioTechniques 54 (5), pp. 251-256.

Klein, Matthias S. and Dorn, Christoph and Saugspier, Michael Sebastian and Hellerbrand, Claus and Oefner, Peter J. and Gronwald, Wolfram (2011) Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics 7 (2), pp. 237-246.

NMR spectroscopy

Zacharias, Helena and Schley, Gunnar and Hochrein, Jochen and Klein, Matthias S. and Köberle, Carmen and Eckardt, Kai-Uwe and Willam, Carsten and Oefner, Peter J. and Gronwald, Wolfram (2013) Analysis of human urine reveals metabolic changes related to the development of acute kidney injury following cardiac surgery. Metabolomics 9 (3), pp. 697-707.

Nonalcoholic fatty liver disease

Klein, Matthias S. and Dorn, Christoph and Saugspier, Michael Sebastian and Hellerbrand, Claus and Oefner, Peter J. and Gronwald, Wolfram (2011) Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics 7 (2), pp. 237-246.

Nonalcoholic steatohepatitis

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

nuclear magnetic resonance

Klein, Matthias S. and Almstetter, Martin F. and Schlamberger, G. and Nürnberger, Nadine and Dettmer, Katja and Oefner, Peter J. and Meyer, H. H. D. and Wiedemann, Steffi and Gronwald, Wolfram (2010) Nuclear magnetic resonance and mass spectrometry-based milk metabolomics in dairy cows during early and late lactation. Journal of dairy science 93 (4), pp. 1539-1550.

Organic acids

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

ovarian cancer

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

Penetrance of BRCA2

Tea, Muy-Kheng M. and Kroiss, Regina and Muhr, Daniela and Fuerhauser-Rappaport, Christine and Oefner, Peter J. and Wagner, Teresa M and Singer, Christian F. (2013) Central European BRCA2 mutation carriers: Birth cohort status correlates with onset of breast cancer. Maturitas.

plasma

Klein, Matthias S. and Almstetter, Martin F. and Nürnberger, Nadine and Sigl, Gregor and Gronwald, Wolfram and Wiedemann, Steffi and Dettmer, Katja and Oefner, Peter J. (2013) Correlations between milk and plasma levels of amino and carboxylic acids in dairy cows. Journal of Proteome Research 12 (11), pp. 5223-5232.

preneoplastic changes

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

Primary cells

Dettmer, Katja and Vogl, Franziska C. and Ritter, Axel P. and Zhu, Wentao and Nürnberger, Nadine and Kreutz, Marina and Oefner, Peter J. and Gronwald, Wolfram and Gottfried, Eva (2013) Distinct metabolic differences between various human cancer and primary cells. ELECTROPHORESIS 34 (19), pp. 2836-2847.

PRMT

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

PROCOS

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

profiling

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

prophylactic salpingo-oophorectomy

Primas, Helga and Kroiss, Regina and Kalteis, Karin and Rappaport, Christine and Muhr, Daniela and Primas, Christian and Kubista, Ernst and Horvat, Reinhard and Oefner, Peter J. and Singer, Christian F. and Wagner, Teresa and Austrian Hereditary Breast and Ovarian Cancer Group, The (2012) Impact of lifestyle factors on preneoplastic changes in prophylactic oophorectomies of BRCA mutation carriers. European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 21 (2), pp. 199-204.

Protein arginine methylation

Limm, Katharina and Ott, Corinna and Wallner, Susanne and Mueller, Daniel W. and Oefner, Peter J. and Hellerbrand, Claus and Bosserhoff, Anja-Katrin (2013) Deregulation of protein methylation in melanoma. European journal of cancer 49 (6), pp. 1305-1313.

protein-protein docking

Fink, Florian and Ederer, Stephan and Gronwald, Wolfram (2009) Protein-Protein Interaction Analysis by Docking. Algorithms 2 (1), pp. 429-436.

protein-protein-complexes

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

quantification

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

Klein, Matthias S. and Oefner, Peter J. and Gronwald, Wolfram (2013) MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D (1)H and (1)H-(13)C HSQC NMR spectra. BioTechniques 54 (5), pp. 251-256.

Raf kinases

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

regulatory T cell

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

Retention crossover

Dettmer, Katja (2014) Assessment of ionic liquid stationary phases for the GC analysis of fatty acid methyl esters. Analytical and Bioanalytical Chemistry 406, pp. 4931-4939.

RNAi

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

rs11564299

Ruedel, Anke and Stark, Klaus and Kaufmann, Simone and Bauer, Richard and Reinders, Jörg and Rovensky, Jozef and Blazicková, Stanislava and Oefner, Peter J. and Bosserhoff, Anja Katrin (2014) N-cadherin promoter polymorphisms and risk of osteoarthritis. FASEB journal 28 (2), pp. 683-691.

scoring

Fink, Florian (2011) Computational analysis of docked protein-protein complexes. PhD, Universität Regensburg

Serum

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Dettmer, Katja and Almstetter, Martin F. and Appel, Inka and Nürnberger, Nadine and Schlamberger, Gregor and Gronwald, Wolfram and Meyer, Heinrich H. D. and Oefner, Peter J. (2010) Comparison of serum versus plasma collection in gas chromatography--mass spectrometry-based metabolomics. Electrophoresis 31 (14), pp. 2365-2373.

shRNA

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

signal transduction

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

siRNA

Völler, D. and Reinders, Jörg and Meister, Gunter and Bosserhoff, Anja-Katrin (2013) Strong reduction of AGO2 expression in melanoma and cellular consequences. British Journal of Cancer 109, pp. 3116-3124.

SOCS1 mutation

Schif, Birgit and Lennerz, Jochen K. and Kohler, Christian and Bentink, Stefan and Kreuz, Markus and Melzner, Ingo and Ritz, Olga and Trümper, Lorenz and Loeffler, Markus and Spang, Rainer and Möller, Peter (2013) SOCS1 mutation subtypes predict divergent outcomes in diffuse large B-Cell lymphoma (DLBCL) patients. Oncotarget 4 (1), pp. 35-47.

Spike-in experiment

Almstetter, Martin F. and Appel, Inka and Dettmer, Katja and Gruber, Michael and Oefner, Peter J. (2011) Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (39), pp. 7031-7038.

Stat3

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

statistical data analysis

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics Volume 1 (# 3), pp. 253-268.

Zacharias, Helena and Hochrein, Jochen and Klein, Matthias S. and Samol, Claudia and Oefner, Peter J. and Gronwald, Wolfram (2013) Current Experimental, Bioinformatic and Statistical Methods used in NMR Based Metabolomics. Current Metabolomics 1 (3), pp. 253-268.

TLR

Chirasani, Sridhar Reddy and Leukel, Petra and Gottfried, Eva and Hochrein, Jochen and Stadler, Katrin and Neumann, Bernhard and Oefner, Peter J. and Gronwald, Wolfram and Bogdahn, Ulrich and Hau, Peter and Kreutz, Marina and Grauer, Oliver M. (2013) Diclofenac inhibits lactate formation and efficiently counteracts local immune suppression in a murine glioma model. International journal of cancer. Journal international du cancer 132 (4), pp. 843-53.

transport

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

Tumor cells

Dettmer, Katja and Vogl, Franziska C. and Ritter, Axel P. and Zhu, Wentao and Nürnberger, Nadine and Kreutz, Marina and Oefner, Peter J. and Gronwald, Wolfram and Gottfried, Eva (2013) Distinct metabolic differences between various human cancer and primary cells. ELECTROPHORESIS 34 (19), pp. 2836-2847.

Two-dimensional differential in-gel electrophoresis

Thomas, Anja and Stevens, Axel Peter and Klein, Matthias S. and Hellerbrand, Claus and Dettmer, Katja and Gronwald, Wolfram and Oefner, Peter J. and Reinders, Jörg (2012) Early changes in the liver-soluble proteome from mice fed a nonalcoholic steatohepatitis inducing diet. Proteomics 12 (9), pp. 1437-1451.

ubiquitin

Sanges, C. and Scheuermann, C. and Zahedi, R. P. and Sickmann, A. and Lamberti, A. and Migliaccio, N. and Baljuls, A. and Marra, M. and Zappavigna, S. and Reinders, Jörg and Rapp, U. and Abbruzzese, A. and Caraglia, M. and Arcari, P. (2012) Raf kinases mediate the phosphorylation of eukaryotic translation elongation factor 1A and regulate its stability in eukaryotic cells. Cell Death and Disease 3, e276.

Ulcerative Colitis

Vossenkämper, Anna and Hundsrucker, Christian and Page, Kevin and van Maurik, Andre and Sanders, Theodore J. and Stagg, Andrew J. and Das, Lisa and MacDonald, Thomas T. (2014) A CD3-Specific Antibody Reduces Cytokine Production and Alters Phosphoprotein Profiles in Intestinal Tissues From Patients With Inflammatory Bowel Disease. The American Journal of Gastroenterology 147 (1), pp. 172-183.

Umfassende 2-dimensionale Gas Chromatographie gekoppelt mit der Flugzeitmassenspektrometrie

Almstetter, Martin F. (2012) Tools and applications for one- and two-dimensional
gas chromatography – time-of-flight mass spectrometry-based metabolomics.
PhD, Universität Regensburg

Urine

Waldhier, Magdalena Ch. and Almstetter, Martin F. and Nürnberger, Nadine and Gruber, Michael and Dettmer, Katja and Oefner, Peter J. (2011) Improved enantiomer resolution and quantification of free D-amino acids in serum and urine by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Journal of chromatography A 1218 (28), pp. 4537-4544.

Klein, Matthias S. and Dorn, Christoph and Saugspier, Michael Sebastian and Hellerbrand, Claus and Oefner, Peter J. and Gronwald, Wolfram (2011) Discrimination of steatosis and NASH in mice using nuclear magnetic resonance spectroscopy. Metabolomics 7 (2), pp. 237-246.

vacuole

Wingenter, Karina and Trentmann, Oliver and Winschuh, Irina and Hörmiller, Imke I and Heyer, Arnd G. and Reinders, Jörg and Schulz, Alexander and Geiger, Dietmar and Hedrich, Rainer and Neuhaus, H. Ekkehard (2011) A member of the mitogen-activated protein 3-kinase family is involved in the regulation of plant vacuolar glucose uptake. The Plant journal 68 (5), pp. 890-900.

verification of protein interactions

Fink, Florian and Ederer, Stephan and Gronwald, Wolfram (2009) Protein-Protein Interaction Analysis by Docking. Algorithms 2 (1), pp. 429-436.

This list was generated on Wed Oct 22 14:23:41 2014 CEST.
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