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A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences

Oberprieler, Christoph, Wagner, Florian, Tomasello, Salvatore, Konowalik, Kamil and Freckleton, Robert (2016) A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences. Methods in Ecology and Evolution 8 (7), pp. 835-849.

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Other URL: http://doi.org/10.1111/2041-210X.12694


Abstract

1. Context and purpose. Due to ubiquity of polyploid species formation in angiosperms, reconstructing the evolutionary history of polyploid complexes is at the forefront of methodological field of activity in molecular phylogenetics and systematic botany. The advent of multilocus species tree reconstruction approaches motivated by next-generation sequencing methods pave the way to species network ...

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Item type:Article
Date:2016
Institutions:Biology, Preclinical Medicine > Institut für Pflanzenwissenschaften > Group Plant Systematics and Evolution (Prof. Dr. Christoph Oberprieler)
Identification Number:
ValueType
10.1111/2041-210X.12694DOI
Keywords:MAXIMUM-LIKELIHOOD; INFERENCE; EVOLUTIONARY; HYBRIDIZATION; DELIMITATION; HISTORY; PHYLOGENOMICS; HEURISTICS; COMPOSITAE; PACKAGE; 454 sequencing; coalescent theory; gene tree; multilocus phylogeny; polyploidy; reticulate evolution; simulations; species network; species tree
Dewey Decimal Classification:500 Science > 580 Botanical sciences
Status:Published
Refereed:Yes, this version has been refereed
Created at the University of Regensburg:Yes
Item ID:39412
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