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A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences

Oberprieler, Christoph ; Wagner, Florian ; Tomasello, Salvatore ; Konowalik, Kamil ; Freckleton, Robert


1. Context and purpose. Due to ubiquity of polyploid species formation in angiosperms, reconstructing the evolutionary history of polyploid complexes is at the forefront of methodological field of activity in molecular phylogenetics and systematic botany. The advent of multilocus species tree reconstruction approaches motivated by next-generation sequencing methods pave the way to species network ...


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