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DNA origami-based single-molecule force spectroscopy elucidates RNA Polymerase III pre-initiation complex stability
Kramm, Kevin, Schröder, Tim, Gouge, Jerome
, Vera, Andrés Manuel
, Gupta, Kapil
, Heiss, Florian B.
, Liedl, Tim
, Engel, Christoph, Berger, Imre
, Vannini, Alessandro
, Tinnefeld, Philip and Grohmann, Dina
(2020)
DNA origami-based single-molecule force spectroscopy elucidates RNA Polymerase III pre-initiation complex stability.
Nature Communications 11 (2828), pp. 1-12.
Date of publication of this fulltext: 02 Nov 2020 11:29
Article
DOI to cite this document: 10.5283/epub.44036
Abstract
The TATA-binding protein (TBP) and a transcription factor (TF) IIB-like factor are important constituents of all eukaryotic initiation complexes. The reason for the emergence and strict requirement of the additional initiation factor Bdp1 in the RNA polymerase (RNAP) III system, however, remained elusive. A poorly studied aspect in this context is the effect of DNA strain arising from DNA ...
The TATA-binding protein (TBP) and a transcription factor (TF) IIB-like factor are important constituents of all eukaryotic initiation complexes. The reason for the emergence and strict requirement of the additional initiation factor Bdp1 in the RNA polymerase (RNAP) III system, however, remained elusive. A poorly studied aspect in this context is the effect of DNA strain arising from DNA compaction and transcriptional activity on initiation complex formation. We made use of a DNA origami-based force clamp to follow the assembly of human initiation complexes in the RNAP II and RNAP III systems at the single-molecule level under piconewton forces. We demonstrate that TBP-DNA complexes are force-sensitive and TFIIB is sufficient to stabilise TBP on a strained promoter. In contrast, Bdp1 is the pivotal component that ensures stable anchoring of initiation factors, and thus the polymerase itself, in the RNAP III system. Thereby, we offer an explanation for the crucial role of Bdp1 for the high transcriptional output of RNAP III. TATA-binding protein (TBP) and a transcription factor (TF) IIB-like factor are important constituents of all eukaryotic initiation complexes. Here, the authors use a DNA origami-based force clamp to investigate the assembly dynamics of human initiation complexes in the RNAP II and RNAP III systems at the single-molecule level under pico newton forces.
Involved Institutions
Details
| Item type | Article | ||||
| Journal or Publication Title | Nature Communications | ||||
| Publisher: | Nature | ||||
|---|---|---|---|---|---|
| Place of Publication: | LONDON | ||||
| Volume: | 11 | ||||
| Number of Issue or Book Chapter: | 2828 | ||||
| Page Range: | pp. 1-12 | ||||
| Date | 5 June 2020 | ||||
| Institutions | Biology, Preclinical Medicine > Institut für Biochemie, Genetik und Mikrobiologie > Lehrstuhl für Mikrobiologie (Archaeenzentrum) > Prof. Dr. Dina Grohmann Biology, Preclinical Medicine > Institut für Biochemie, Genetik und Mikrobiologie > Lehrstuhl für Mikrobiologie (Archaeenzentrum) > Prof. Dr. Dina Grohmann | ||||
| Identification Number |
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| Keywords | TATA-BINDING PROTEIN; TRANSCRIPTION INITIATION; CRYSTAL-STRUCTURE; STRUCTURAL BASIS; PROMOTER DNA; YEAST; TBP; REVEALS; COMPONENTS; TFIIIB; | ||||
| Dewey Decimal Classification | 500 Science > 570 Life sciences | ||||
| Status | Published | ||||
| Refereed | Yes, this version has been refereed | ||||
| Created at the University of Regensburg | Yes | ||||
| URN of the UB Regensburg | urn:nbn:de:bvb:355-epub-440362 | ||||
| Item ID | 44036 |
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