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Mendes, Karina ; Schmidhofer, Sandra ; Minderjahn, Julia ; Glatz, Dagmar ; Kiesewetter, Claudia ; Raithel, Johanna ; Wimmer, Julia ; Gebhard, Claudia ; Rehli, Michael

The epigenetic pioneer EGR2 initiates DNA demethylation in differentiating monocytes at both stable and transient binding sites

Mendes, Karina, Schmidhofer, Sandra, Minderjahn, Julia, Glatz, Dagmar, Kiesewetter, Claudia, Raithel, Johanna, Wimmer, Julia, Gebhard, Claudia and Rehli, Michael (2021) The epigenetic pioneer EGR2 initiates DNA demethylation in differentiating monocytes at both stable and transient binding sites. Nature Communications 12 (1), pp. 1-15.

Date of publication of this fulltext: 15 Jul 2021 17:57
Article
DOI to cite this document: 10.5283/epub.46387


Abstract

The differentiation of human blood monocytes (MO), the post-mitotic precursors of macrophages (MAC) and dendritic cells (moDC), is accompanied by the active turnover of DNA methylation, but the extent, consequences and mechanisms of DNA methylation changes remain unclear. Here, we profile and compare epigenetic landscapes during IL-4/GM-CSF-driven MO differentiation across the genome and detect ...

The differentiation of human blood monocytes (MO), the post-mitotic precursors of macrophages (MAC) and dendritic cells (moDC), is accompanied by the active turnover of DNA methylation, but the extent, consequences and mechanisms of DNA methylation changes remain unclear. Here, we profile and compare epigenetic landscapes during IL-4/GM-CSF-driven MO differentiation across the genome and detect several thousand regions that are actively demethylated during culture, both with or without accompanying changes in chromatin accessibility or transcription factor (TF) binding. We further identify TF that are globally associated with DNA demethylation processes. While interferon regulatory factor 4 (IRF4) is found to control hallmark dendritic cell functions with less impact on DNA methylation, early growth response 2 (EGR2) proves essential for MO differentiation as well as DNA methylation turnover at its binding sites. We also show that ERG2 interacts with the 5mC hydroxylase TET2, and its consensus binding sequences show a characteristic DNA methylation footprint at demethylated sites with or without detectable protein binding. Our findings reveal an essential role for EGR2 as epigenetic pioneer in human MO and suggest that active DNA demethylation can be initiated by the TET2-recruiting TF both at stable and transient binding sites. DNA methylation turnover is an essential epigenetic process during development. Here, the authors look at the changes in DNA methylation during the differentiation of post-mitotic human monocytes (MO), and find that EGR2 interacts with TET2 and is required for DNA demethylation at its binding sites; revealing EGR2 as an epigenetic pioneer factor in human MO.



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Details

Item typeArticle
Journal or Publication TitleNature Communications
Publisher:Nature
Open Access Type:DEAL (Springer Gold)
Place of Publication:BERLIN
Volume:12
Number of Issue or Book Chapter:1
Page Range:pp. 1-15
Date10 March 2021
InstitutionsMedicine > Lehrstuhl für Innere Medizin III (Hämatologie und Internistische Onkologie)
Identification Number
ValueType
10.1038/s41467-021-21661-yDOI
Keywords;
Dewey Decimal Classification500 Science > 570 Life sciences
StatusPublished
RefereedYes, this version has been refereed
Created at the University of RegensburgYes
URN of the UB Regensburgurn:nbn:de:bvb:355-epub-463879
Item ID46387

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