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Multi‐Site Conformational Exchange in the Synthetic Neomycin‐Sensing Riboswitch Studied by 19 F NMR
Overbeck, Jan H.
, Vögele, Jennifer, Nussbaumer, Felix, Duchardt‐Ferner, Elke, Kreutz, Christoph, Wöhnert, Jens und Sprangers, Remco
(2023)
Multi‐Site Conformational Exchange in the Synthetic Neomycin‐Sensing Riboswitch Studied by 19 F NMR.
Angewandte Chemie International Edition.
Veröffentlichungsdatum dieses Volltextes: 03 Mai 2023 13:05
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.54155
Zusammenfassung
The synthetic neomycin-sensing riboswitch interacts with its cognate ligand neomycin as well as with the related antibiotics ribostamycin and paromomycin. Binding of these aminoglycosides induces a very similar ground state structure in the RNA, however, only neomycin can efficiently repress translation initiation. The molecular origin of these differences has been traced back to differences in ...
The synthetic neomycin-sensing riboswitch interacts with its cognate ligand neomycin as well as with the related antibiotics ribostamycin and paromomycin. Binding of these aminoglycosides induces a very similar ground state structure in the RNA, however, only neomycin can efficiently repress translation initiation. The molecular origin of these differences has been traced back to differences in the dynamics of the ligand:riboswitch complexes. Here, we combine five complementary fluorine based NMR methods to accurately quantify seconds to microseconds dynamics in the three riboswitch complexes. Our data reveal complex exchange processes with up to four structurally different states. We interpret our findings in a model that shows an interplay between different chemical groups in the antibiotics and specific bases in the riboswitch. More generally, our data underscore the potential of F-19 NMR methods to characterize complex exchange processes with multiple excited states.
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| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | Angewandte Chemie International Edition | ||||
| Verlag: | WILEY-V C H VERLAG GMBH | ||||
|---|---|---|---|---|---|
| Ort der Veröffentlichung: | WEINHEIM | ||||
| Datum | 27 März 2023 | ||||
| Institutionen | Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Remco Sprangers Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Remco Sprangers | ||||
| Identifikationsnummer |
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| Stichwörter / Keywords | RELAXATION DISPERSION; CHEMICAL-EXCHANGE; PROTEIN STATES; EXCITED-STATES; NUCLEIC-ACIDS; INTERMEDIATE; SPECTROSCOPY; DOMAIN; DYNAMICS; PATHWAY; Aminoglycosides; F-19 NMR; NMR Spectroscopy; RNA Dynamics | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 540 Chemie 500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Zum Teil | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-541554 | ||||
| Dokumenten-ID | 54155 |
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