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FastqPuri: high-performance preprocessing of RNA-seq data

Peréz-Rubio, Paula, Lottaz, Claudio and Engelmann, Julia C. (2018) FastqPuri: high-performance preprocessing of RNA-seq data. bioRxiv. (Submitted)

License: Creative Commons Attribution 4.0
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Date of publication of this fulltext: 26 Apr 2019 07:08

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Other URL: https://www.biorxiv.org/content/10.1101/480707v1.full


Background RNA sequencing (RNA-seq) has become the standard means of analyzing gene and transcript expression in high-throughput. While previously sequence alignment was a time demanding step, fast alignment methods and even more so transcript counting methods which avoid mapping and quantify gene and transcript expression by evaluating whether a read is compatible with a transcript, have led to ...


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Item type:Article
Date:December 2018
Institutions:Medicine > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
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Dewey Decimal Classification:600 Technology > 610 Medical sciences Medicine
Refereed:No, this version has not been refereed yet (as with preprints)
Created at the University of Regensburg:Yes
Item ID:40096
Owner only: item control page


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