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FastqPuri: high-performance preprocessing of RNA-seq data

URN to cite this document:
urn:nbn:de:bvb:355-epub-400963
DOI to cite this document:
10.5283/epub.40096
Perez-Rubio, Paula ; Lottaz, Claudio ; Engelmann, Julia C.
Date of publication of this fulltext: 26 Apr 2019 07:08


Abstract

Background RNA sequencing (RNA-seq) has become the standard means of analyzing gene and transcript expression in high-throughput. While previously sequence alignment was a time demanding step, fast alignment methods and even more so transcript counting methods which avoid mapping and quantify gene and transcript expression by evaluating whether a read is compatible with a transcript, have led to ...

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