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Wurm, Jan Philip

Assignment of the Ile, Leu, Val, Met and Ala methyl group resonances of the DEAD-box RNA helicase DbpA from E. coli

Wurm, Jan Philip (2020) Assignment of the Ile, Leu, Val, Met and Ala methyl group resonances of the DEAD-box RNA helicase DbpA from E. coli. Biomolecular NMR Assignments.

Date of publication of this fulltext: 08 Feb 2021 13:45
Article
DOI to cite this document: 10.5283/epub.44809


Abstract

ATP-dependent DEAD-box helicases constitute one of the largest families of RNA helicases and are important regulators of most RNA-dependent cellular processes. The functional core of these enzymes consists of two RecA-like domains. Changes in the interdomain orientation of these domains upon ATP and RNA binding result in the unwinding of double-stranded RNA. The DEAD-box helicase DbpA from E. ...

ATP-dependent DEAD-box helicases constitute one of the largest families of RNA helicases and are important regulators of most RNA-dependent cellular processes. The functional core of these enzymes consists of two RecA-like domains. Changes in the interdomain orientation of these domains upon ATP and RNA binding result in the unwinding of double-stranded RNA. The DEAD-box helicase DbpA from E. coli is involved in ribosome maturation. It possesses a C-terminal RNA recognition motif (RRM) in addition to the canonical RecA-like domains. The RRM recruits DbpA to nascent ribosomes by binding to hairpin 92 of the 23S rRNA. To follow the conformational changes of Dbpa during the catalytic cycle we initiated solution state NMR studies. We use a divide and conquer approach to obtain an almost complete resonance assignment of the isoleucine, leucine, valine, methionine and alanine methyl group signals of full length DbpA (49 kDa). In addition, we also report the backbone resonance assignments of two fragments of DbpA that were used in the course of the methyl group assignment. These assignments are the first step towards a better understanding of the molecular mechanism behind the ATP-dependent RNA unwinding process catalyzed by DEAD-box helicases.



Involved Institutions


Details

Item typeArticle
Journal or Publication TitleBiomolecular NMR Assignments
Publisher:Springer
Place of Publication:DORDRECHT
Date2020
InstitutionsBiology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie
Identification Number
ValueType
10.1007/s12104-020-09994-zDOI
KeywordsCRYSTAL-STRUCTURE; COOPERATIVE BINDING; PROTEIN; ATP; DEAD-box helicase; Ribosome assembly; RNA; Methyl group assignment
Dewey Decimal Classification500 Science > 540 Chemistry & allied sciences
500 Science > 570 Life sciences
StatusPublished
RefereedYes, this version has been refereed
Created at the University of RegensburgYes
URN of the UB Regensburgurn:nbn:de:bvb:355-epub-448092
Item ID44809

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