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Overbeck, Jan H. ; Kremer, Werner ; Sprangers, Remco

A suite of 19F based relaxation dispersion experiments to assess biomolecular motions

Overbeck, Jan H., Kremer, Werner und Sprangers, Remco (2020) A suite of 19F based relaxation dispersion experiments to assess biomolecular motions. Journal of Biomolecular NMR 74 (12), S. 753-766.

Veröffentlichungsdatum dieses Volltextes: 11 Jun 2021 04:40
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.45942


Zusammenfassung

Proteins and nucleic acids are highly dynamic bio-molecules that can populate a variety of conformational states. NMR relaxation dispersion (RD) methods are uniquely suited to quantify the associated kinetic and thermodynamic parameters. Here, we present a consistent suite of F-19-based CPMG, on-resonance R-1 rho and off-resonance R-1 rho RD experiments. We validate these experiments by studying ...

Proteins and nucleic acids are highly dynamic bio-molecules that can populate a variety of conformational states. NMR relaxation dispersion (RD) methods are uniquely suited to quantify the associated kinetic and thermodynamic parameters. Here, we present a consistent suite of F-19-based CPMG, on-resonance R-1 rho and off-resonance R-1 rho RD experiments. We validate these experiments by studying the unfolding transition of a 7.5 kDa cold shock protein. Furthermore we show that the F-19 RD experiments are applicable to very large molecular machines by quantifying dynamics in the 360 kDa half-proteasome. Our approach significantly extends the timescale of chemical exchange that can be studied with F-19 RD, adds robustness to the extraction of exchange parameters and can determine the absolute chemical shifts of excited states. Importantly, due to the simplicity of F-19 NMR spectra, it is possible to record complete datasets within hours on samples that are of very low costs. This makes the presented experiments ideally suited to complement static structural information from cryo-EM and X-ray crystallography with insights into functionally relevant motions.



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Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftJournal of Biomolecular NMR
Verlag:Springer
Ort der Veröffentlichung:DORDRECHT
Band:74
Nummer des Zeitschriftenheftes oder des Kapitels:12
Seitenbereich:S. 753-766
Datum2020
InstitutionenBiologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie
Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Remco Sprangers
Identifikationsnummer
WertTyp
10.1007/s10858-020-00348-4DOI
Stichwörter / KeywordsCOLD-SHOCK PROTEIN; NUCLEAR-MAGNETIC-RESONANCE; MOLECULAR-WEIGHT PROTEINS; TIME-SCALE DYNAMICS; METHYL-GROUP PROBES; CHEMICAL-EXCHANGE; EXCITED-STATES; R-1-RHO RELAXATION; NMR-SPECTROSCOPY; CAVITY MUTANT; Fluorine; Large complexes; Protein folding; Relaxation dispersion; Structural dynamics
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenJa
URN der UB Regensburgurn:nbn:de:bvb:355-epub-459423
Dokumenten-ID45942

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