Direkt zum Inhalt

Schill, Rudolf ; Klever, Maren ; Rupp, Kevin ; Hu, Y. Linda ; Lösch, Andreas ; Georg, Peter ; Pfahler, Simon ; Vocht, Stefan ; Hansch, Stefan ; Wettig, Tilo ; Grasedyck, Lars ; Spang, Rainer

Reconstructing Disease Histories in Huge Discrete State Spaces

Article

Schill, Rudolf , Klever, Maren, Rupp, Kevin, Hu, Y. Linda , Lösch, Andreas, Georg, Peter, Pfahler, Simon, Vocht, Stefan, Hansch, Stefan, Wettig, Tilo , Grasedyck, Lars and Spang, Rainer (2024) Reconstructing Disease Histories in Huge Discrete State Spaces. KI - Künstliche Intelligenz.

DOI to cite this document: 10.5283/epub.55335


Abstract

Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be ...

Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be huge: Given a set of events, its size exceeds the number of atoms in the universe. Mutual Hazard Networks combine time-to-event modeling with generalized probabilistic graphical models, regularization, and modern numerical tensor formats to enable efficient calculations in large state spaces using compressed data formats. Here we review Mutual Hazard Networks and put them in the context of machine learning theory. We describe how the Mutual Hazard assumption leads to a compact parameterization of the models and show how modern tensor formats allow for efficient computations in large state spaces. Finally, we show how Mutual Hazard Networks reconstruct the most likely history of glioblastomas.



Involved Institutions


Details

Item typeArticle
Journal or Publication TitleKI - Künstliche Intelligenz
PublisherSpringer Nature
Open Access TypeDEAL (Springer)
Date15 January 2024
Date of publication16 Jan 2024 05:25
InstitutionsMedicine > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
Informatics and Data Science > Department Computational Life Science > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)

Physics > Institute of Theroretical Physics > Chair Professor Braun > Group Tilo Wettig
Identification Number
ValueType
10.1007/s13218-023-00822-9DOI
KeywordsCancer genetics · Cancer progression model · Continuous-time Markov chains · Glioblastoma · Huge combinatorial state spaces · Low-rank tensor formats · Probabilistic graphical models · Proportional hazards · Reconstruction of latent processes
Dewey Decimal Classification500 Science > 530 Physics
600 Technology > 610 Medical sciences Medicine
StatusPublished
RefereedYes, this version has been refereed
Created at the University of RegensburgPartially
URN of the UB Regensburgurn:nbn:de:bvb:355-epub-553351
Item ID55335

Export bibliographical data

Owner only: item control page

nach oben