| Published Version Download ( PDF | 1MB) | License: Creative Commons Attribution 4.0 |
Reconstructing Disease Histories in Huge Discrete State Spaces
Article
Schill, Rudolf
, Klever, Maren, Rupp, Kevin, Hu, Y. Linda
, Lösch, Andreas, Georg, Peter, Pfahler, Simon, Vocht, Stefan, Hansch, Stefan, Wettig, Tilo
, Grasedyck, Lars and Spang, Rainer
(2024)
Reconstructing Disease Histories in Huge Discrete State Spaces.
KI - Künstliche Intelligenz.
DOI to cite this document: 10.5283/epub.55335
Abstract
Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be ...
Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be huge: Given a set of events, its size exceeds the number of atoms in the universe. Mutual Hazard Networks combine time-to-event modeling with generalized probabilistic graphical models, regularization, and modern numerical tensor formats to enable efficient calculations in large state spaces using compressed data formats. Here we review Mutual Hazard Networks and put them in the context of machine learning theory. We describe how the Mutual Hazard assumption leads to a compact parameterization of the models and show how modern tensor formats allow for efficient computations in large state spaces. Finally, we show how Mutual Hazard Networks reconstruct the most likely history of glioblastomas.
Alternative links to fulltext
Involved Institutions
Details
| Item type | Article | ||||
| Journal or Publication Title | KI - Künstliche Intelligenz | ||||
| Publisher | Springer Nature | ||||
| Open Access Type | DEAL (Springer) | ||||
| Date | 15 January 2024 | ||||
| Date of publication | 16 Jan 2024 05:25 | ||||
| Institutions | Medicine > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Informatics and Data Science > Department Computational Life Science > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Physics > Institute of Theroretical Physics > Chair Professor Braun > Group Tilo Wettig | ||||
| Identification Number |
| ||||
| Keywords | Cancer genetics · Cancer progression model · Continuous-time Markov chains · Glioblastoma · Huge combinatorial state spaces · Low-rank tensor formats · Probabilistic graphical models · Proportional hazards · Reconstruction of latent processes | ||||
| Dewey Decimal Classification | 500 Science > 530 Physics 600 Technology > 610 Medical sciences Medicine | ||||
| Status | Published | ||||
| Refereed | Yes, this version has been refereed | ||||
| Created at the University of Regensburg | Partially | ||||
| URN of the UB Regensburg | urn:nbn:de:bvb:355-epub-553351 | ||||
| Item ID | 55335 |
Download Statistics
Download Statistics