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Reconstructing Disease Histories in Huge Discrete State Spaces
Schill, Rudolf
, Klever, Maren, Rupp, Kevin, Hu, Y. Linda
, Lösch, Andreas, Georg, Peter, Pfahler, Simon, Vocht, Stefan, Hansch, Stefan, Wettig, Tilo
, Grasedyck, Lars und Spang, Rainer
(2024)
Reconstructing Disease Histories in Huge Discrete State Spaces.
KI - Künstliche Intelligenz.
Veröffentlichungsdatum dieses Volltextes: 16 Jan 2024 05:25
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.55335
Zusammenfassung
Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be ...
Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be huge: Given a set of events, its size exceeds the number of atoms in the universe. Mutual Hazard Networks combine time-to-event modeling with generalized probabilistic graphical models, regularization, and modern numerical tensor formats to enable efficient calculations in large state spaces using compressed data formats. Here we review Mutual Hazard Networks and put them in the context of machine learning theory. We describe how the Mutual Hazard assumption leads to a compact parameterization of the models and show how modern tensor formats allow for efficient computations in large state spaces. Finally, we show how Mutual Hazard Networks reconstruct the most likely history of glioblastomas.
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| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | KI - Künstliche Intelligenz | ||||
| Verlag: | Springer Nature | ||||
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| Datum | 15 Januar 2024 | ||||
| Institutionen | Medizin > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Informatik und Data Science > Fachbereich Bioinformatik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Physik > Institut für Theoretische Physik > Lehrstuhl Professor Braun > Arbeitsgruppe Tilo Wettig | ||||
| Identifikationsnummer |
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| Stichwörter / Keywords | Cancer genetics · Cancer progression model · Continuous-time Markov chains · Glioblastoma · Huge combinatorial state spaces · Low-rank tensor formats · Probabilistic graphical models · Proportional hazards · Reconstruction of latent processes | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 530 Physik 600 Technik, Medizin, angewandte Wissenschaften > 610 Medizin | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Zum Teil | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-553351 | ||||
| Dokumenten-ID | 55335 |
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