Direkt zum Inhalt

Schill, Rudolf ; Klever, Maren ; Rupp, Kevin ; Hu, Y. Linda ; Lösch, Andreas ; Georg, Peter ; Pfahler, Simon ; Vocht, Stefan ; Hansch, Stefan ; Wettig, Tilo ; Grasedyck, Lars ; Spang, Rainer

Reconstructing Disease Histories in Huge Discrete State Spaces

Schill, Rudolf , Klever, Maren, Rupp, Kevin, Hu, Y. Linda , Lösch, Andreas, Georg, Peter, Pfahler, Simon, Vocht, Stefan, Hansch, Stefan, Wettig, Tilo , Grasedyck, Lars und Spang, Rainer (2024) Reconstructing Disease Histories in Huge Discrete State Spaces. KI - Künstliche Intelligenz.

Veröffentlichungsdatum dieses Volltextes: 16 Jan 2024 05:25
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.55335


Zusammenfassung

Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be ...

Many progressive diseases develop unnoticed and insidiously at the beginning. This leads to an observational gap, since the first data on the disease can only be obtained after diagnosis. Mutual Hazard Networks address this gap by reconstructing latent disease dynamics. They model the disease as a Markov chain on the space of all possible combinations of progression events. This space can be huge: Given a set of events, its size exceeds the number of atoms in the universe. Mutual Hazard Networks combine time-to-event modeling with generalized probabilistic graphical models, regularization, and modern numerical tensor formats to enable efficient calculations in large state spaces using compressed data formats. Here we review Mutual Hazard Networks and put them in the context of machine learning theory. We describe how the Mutual Hazard assumption leads to a compact parameterization of the models and show how modern tensor formats allow for efficient computations in large state spaces. Finally, we show how Mutual Hazard Networks reconstruct the most likely history of glioblastomas.



Beteiligte Einrichtungen


Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftKI - Künstliche Intelligenz
Verlag:Springer Nature
Datum15 Januar 2024
InstitutionenMedizin > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
Informatik und Data Science > Fachbereich Bioinformatik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)

Physik > Institut für Theoretische Physik > Lehrstuhl Professor Braun > Arbeitsgruppe Tilo Wettig
Identifikationsnummer
WertTyp
10.1007/s13218-023-00822-9DOI
Stichwörter / KeywordsCancer genetics · Cancer progression model · Continuous-time Markov chains · Glioblastoma · Huge combinatorial state spaces · Low-rank tensor formats · Probabilistic graphical models · Proportional hazards · Reconstruction of latent processes
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 530 Physik
600 Technik, Medizin, angewandte Wissenschaften > 610 Medizin
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenZum Teil
URN der UB Regensburgurn:nbn:de:bvb:355-epub-553351
Dokumenten-ID55335

Bibliographische Daten exportieren

Nur für Besitzer und Autoren: Kontrollseite des Eintrags

nach oben