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Rudack, Till ; Scherlo, Marvin

Data Set of Publication Replacement of a single residue in an antibody abolishes cognate antigen binding, as predicted by theoretical methods

Rudack, Till and Scherlo, Marvin (2025) Data Set of Publication Replacement of a single residue in an antibody abolishes cognate antigen binding, as predicted by theoretical methods. [Dataset]

Date of publication of this fulltext: 08 Oct 2025 07:24
Dataset
DOI to cite this document: 10.5283/epub.77910


Abstract

Data archive for the publication: Structural insights into the interaction between antibodies and antigens at the atomic level are pivotal for understanding the molecular mechanisms of antigen binding. Despite the availability of structural models generated by recent artificial intelligence advancements, computational predictions require experimental validation to confirm their accuracy. Here, ...

Data archive for the publication:

Structural insights into the interaction between antibodies and antigens at the atomic level are pivotal for understanding the molecular mechanisms of antigen binding. Despite the availability of structural models generated by recent artificial intelligence advancements, computational predictions require experimental validation to confirm their accuracy. Here, we demonstrate a novel approach that combines computational protein modeling with spectroscopic experiments to validate antibody-antigen interactions. As a case example we use solanezumab, a monoclonal antibody that targets amyloid-beta (Aβ), whose misfolding is the main factor responsible for Alzheimer’s disease. For this antibody we predicted a single mutation, G95AHC, within the paratope of the heavy chain to disrupt antigen binding. This mutation, referred to as a “dead mutant”, was experimentally validated using an immuno-infrared biosensor (iRS). Our results confirmed that the mutation abolished antigen binding without affecting the native structure of the antibody. The use of dead mutants enables precise differentiation between specific and nonspecific binding, which is particularly important in medical diagnostics. We applied this approach to analyze the binding of solanezumab to synthetically produced Aβ variants and Aβ catched by the iRS functionalized surface from cerebrospinal fluid, showcasing its utility in Alzheimer’s disease diagnostics. These findings highlight the value of computational modeling and experimental validation in understanding antigen-antibody interactions, with significant implications for diagnostic and therapeutic applications.


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Details

Item typeDataset
Open Access Type:Primary Publication
Date7 October 2025
InstitutionsBiology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Till Rudack
Dewey Decimal Classification500 Science > 570 Life sciences
StatusSubmitted
RefereedNo, this version has not been refereed yet (as with preprints)
Created at the University of RegensburgYes
URN of the UB Regensburgurn:nbn:de:bvb:355-epub-779101
Item ID77910

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