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Hupfeld, Enrico ; Schlee, Sandra ; Wurm, Jan Philip ; Rajendran, Chitra ; Yehorova, Dariia ; Vos, Eva ; Ravindra Raju, Dinesh ; Kamerlin, Shina Caroline Lynn ; Sprangers, Remco ; Sterner, Reinhard

Conformational Modulation of a Mobile Loop Controls Catalysis in the (βα)8-Barrel Enzyme of Histidine Biosynthesis HisF

Hupfeld, Enrico, Schlee, Sandra, Wurm, Jan Philip , Rajendran, Chitra, Yehorova, Dariia, Vos, Eva, Ravindra Raju, Dinesh, Kamerlin, Shina Caroline Lynn, Sprangers, Remco und Sterner, Reinhard (2024) Conformational Modulation of a Mobile Loop Controls Catalysis in the (βα)8-Barrel Enzyme of Histidine Biosynthesis HisF. JACS Au 4 (8), S. 3258-3276.

Veröffentlichungsdatum dieses Volltextes: 30 Sep 2024 13:03
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.59288


Zusammenfassung

The overall significance of loop motions for enzymatic activity is generally accepted. However, it has largely remained unclear whether and how such motions can control different steps of catalysis. We have studied this problem on the example of the mobile active site β1α1-loop (loop1) of the (βα)8-barrel enzyme HisF, which is the cyclase subunit of imidazole glycerol phosphate synthase. Loop1 ...

The overall significance of loop motions for enzymatic activity is generally accepted. However, it has largely remained unclear whether and how such motions can control different steps of catalysis. We have studied this problem on the example of the mobile active site β1α1-loop (loop1) of the (βα)8-barrel enzyme HisF, which is the cyclase subunit of imidazole glycerol phosphate synthase. Loop1 variants containing single mutations of conserved amino acids showed drastically reduced rates for the turnover of the substrates N′-[(5′-phosphoribulosyl) formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PrFAR) and ammonia to the products imidazole glycerol phosphate (ImGP) and 5-aminoimidazole-4-carboxamide-ribotide (AICAR). A comprehensive mechanistic analysis including stopped-flow kinetics, X-ray crystallography, NMR spectroscopy, and molecular dynamics simulations detected three conformations of loop1 (open, detached, closed) whose populations differed between wild-type HisF and functionally affected loop1 variants. Transient stopped-flow kinetic experiments demonstrated that wt-HisF binds PrFAR by an induced-fit mechanism whereas catalytically impaired loop1 variants bind PrFAR by a simple two-state mechanism. Our findings suggest that PrFAR-induced formation of the closed conformation of loop1 brings active site residues in a productive orientation for chemical turnover, which we show to be the rate-limiting step of HisF catalysis. After the cyclase reaction, the closed loop conformation is destabilized, which favors the formation of detached and open conformations and hence facilitates the release of the products ImGP and AICAR. Our data demonstrate how different conformations of active site loops contribute to different catalytic steps, a finding that is presumably of broad relevance for the reaction mechanisms of (βα)8-barrel enzymes and beyond.



Beteiligte Einrichtungen


Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftJACS Au
Verlag:American Chemical Society (ACS)
Band:4
Nummer des Zeitschriftenheftes oder des Kapitels:8
Seitenbereich:S. 3258-3276
Datum15 August 2024
InstitutionenBiologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie
Projekte
Gefördert von: Deutsche Forschungsgemeinschaft (DFG) (273747520)
Identifikationsnummer
WertTyp
10.1021/jacsau.4c00558DOI
Stichwörter / Keywords(βα)8-barrel, protein dynamics, loop motion, enzyme kinetics, enzyme mechanism, stopped-flow analysis, nuclear magnetic resonance spectroscopy, molecular dynamics simulation
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 540 Chemie
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenJa
URN der UB Regensburgurn:nbn:de:bvb:355-epub-592880
Dokumenten-ID59288

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