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Aryee, Martin J. ; Liu, Wennuan ; Engelmann, Julia C. ; Nuhn, Philipp ; Gurel, Meltem ; Haffner, Michael C. ; Esopi, David ; Irizarry, Rafael A. ; Getzenberg, Robert H. ; Nelson, William G. ; Luo, Jun ; Xu, Jianfeng ; Isaacs, William B. ; Bova, G. Steven ; Yegnasubramanian, Srinivasan

DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases.

Aryee, Martin J., Liu, Wennuan, Engelmann, Julia C., Nuhn, Philipp, Gurel, Meltem, Haffner, Michael C., Esopi, David, Irizarry, Rafael A., Getzenberg, Robert H., Nelson, William G., Luo, Jun, Xu, Jianfeng, Isaacs, William B., Bova, G. Steven und Yegnasubramanian, Srinivasan (2013) DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases. Science translational medicine 5 (169), 169ra10.

Veröffentlichungsdatum dieses Volltextes: 05 Aug 2014 09:18
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.30526


Zusammenfassung

Human cancers almost ubiquitously harbor epigenetic alterations. Although such alterations in epigenetic marks, including DNA methylation, are potentially heritable, they can also be dynamically altered. Given this potential for plasticity, the degree to which epigenetic changes can be subject to selection and act as drivers of neoplasia has been questioned. We carried out genome-scale analyses ...

Human cancers almost ubiquitously harbor epigenetic alterations. Although such alterations in epigenetic marks, including DNA methylation, are potentially heritable, they can also be dynamically altered. Given this potential for plasticity, the degree to which epigenetic changes can be subject to selection and act as drivers of neoplasia has been questioned. We carried out genome-scale analyses of DNA methylation alterations in lethal metastatic prostate cancer and created DNA methylation "cityscape" plots to visualize these complex data. We show that somatic DNA methylation alterations, despite showing marked interindividual heterogeneity among men with lethal metastatic prostate cancer, were maintained across all metastases within the same individual. The overall extent of maintenance in DNA methylation changes was comparable to that of genetic copy number alterations. Regions that were frequently hypermethylated across individuals were markedly enriched for cancer- and development/differentiation-related genes. Additionally, regions exhibiting high consistency of hypermethylation across metastases within individuals, even if variably hypermethylated across individuals, showed enrichment for cancer-related genes. Whereas some regions showed intraindividual metastatic tumor heterogeneity in promoter methylation, such methylation alterations were generally not correlated with gene expression. This was despite a general tendency for promoter methylation patterns to be strongly correlated with gene expression, particularly at regions that were variably methylated across individuals. These findings suggest that DNA methylation alterations have the potential for producing selectable driver events in carcinogenesis and disease progression and highlight the possibility of targeting such epigenome alterations for development of longitudinal markers and therapeutic strategies.



Beteiligte Einrichtungen


Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftScience translational medicine
Verlag:American Association for the Advancement of Science
Band:5
Nummer des Zeitschriftenheftes oder des Kapitels:169
Seitenbereich:169ra10
Datum23 Januar 2013
InstitutionenMedizin > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
Informatik und Data Science > Fachbereich Bioinformatik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
Identifikationsnummer
WertTyp
18337604PubMed-ID
10.1126/scitranslmed.3005211DOI
Klassifikation
NotationArt
AllelesMESH
Clone CellsMESH
DNA Methylation/geneticsMESH
DNA-Binding Proteins/geneticsMESH
Epigenesis, GeneticMESH
Gene Expression Regulation, NeoplasticMESH
Genetic HeterogeneityMESH
GenomicsMESH
HumansMESH
MaleMESH
Neoplasm MetastasisMESH
Polymorphism, Single Nucleotide/geneticsMESH
Prostatic Neoplasms/pathologyMESH
Protein Structure, TertiaryMESH
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 500 Naturwissenschaften
500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie
600 Technik, Medizin, angewandte Wissenschaften > 610 Medizin
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenZum Teil
URN der UB Regensburgurn:nbn:de:bvb:355-epub-305265
Dokumenten-ID30526

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