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Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1
Minderjahn, Julia, Schmidt, Andreas, Fuchs, Andreas
, Schill, Rudolf, Raithel, Johanna, Babina, Magda
, Schmidl, C.
, Gebhard, Claudia, Schmidhofer, Sandra, Mendes, Karina
, Ratermann, Anna, Glatz, Dagmar, Nützel, Margit, Edinger, Matthias, Hoffmann, Petra, Spang, Rainer
, Längst, Gernot, Imhof, A. und Rehli, Michael
(2020)
Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1.
Nat Commun 11, S. 402.
Veröffentlichungsdatum dieses Volltextes: 18 Mai 2020 14:31
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.43221
Zusammenfassung
Establishing gene regulatory networks during differentiation or reprogramming requires master or pioneer transcription factors (TFs) such as PU.1, a prototype master TF of hematopoietic lineage differentiation. To systematically determine molecular features that control its activity, here we analyze DNA-binding in vitro and genome-wide in vivo across different cell types with native or ectopic ...
Establishing gene regulatory networks during differentiation or reprogramming requires master or pioneer transcription factors (TFs) such as PU.1, a prototype master TF of hematopoietic lineage differentiation. To systematically determine molecular features that control its activity, here we analyze DNA-binding in vitro and genome-wide in vivo across different cell types with native or ectopic PU.1 expression. Although PU.1, in contrast to classical pioneer factors, is unable to access nucleosomal target sites in vitro, ectopic induction of PU.1 leads to the extensive remodeling of chromatin and redistribution of partner TFs. De novo chromatin access, stable binding, and redistribution of partner TFs both require PU.1's N-terminal acidic activation domain and its ability to recruit SWI/SNF remodeling complexes, suggesting that the latter may collect and distribute co-associated TFs in conjunction with the non-classical pioneer TF PU.1.
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| Dokumentenart | Artikel | ||||||
| Titel eines Journals oder einer Zeitschrift | Nat Commun | ||||||
| Verlag: | Nature | ||||||
|---|---|---|---|---|---|---|---|
| Ort der Veröffentlichung: | LONDON | ||||||
| Band: | 11 | ||||||
| Seitenbereich: | S. 402 | ||||||
| Datum | 21 Januar 2020 | ||||||
| Institutionen | Medizin > Lehrstuhl für Innere Medizin III (Hämatologie und Internistische Onkologie) Leibniz-Institut für Immuntherapie (LIT) Medizin > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Informatik und Data Science > Fachbereich Bioinformatik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang) Biologie und Vorklinische Medizin > Institut für Biochemie, Genetik und Mikrobiologie > Lehrstuhl für Biochemie III > Prof. Dr. Gernot Längst | ||||||
| Identifikationsnummer |
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| Stichwörter / Keywords | TRANSCRIPTION FACTORS; SWI/SNF COMPLEX; GENE-EXPRESSION; REGULATORY ELEMENTS; ACTIVATION DOMAIN; MACROPHAGE; DIFFERENTIATION; REPRESSES; ENHANCERS; SELECTION; | ||||||
| Dewey-Dezimal-Klassifikation | 600 Technik, Medizin, angewandte Wissenschaften > 610 Medizin | ||||||
| Status | Veröffentlicht | ||||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||||
| An der Universität Regensburg entstanden | Zum Teil | ||||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-432217 | ||||||
| Dokumenten-ID | 43221 |
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