Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis

URN to cite this document:: urn:nbn:de:bvb:355-epub-550652
DOI to cite this document:: 10.5283/epub.55065

Kaltdorf, Martin ; Breitenbach, Tim ; Karl, Stefan ; Fuchs, Maximilian ; Kessie, David Komla ; Psota, Eric ; Prelog, Martina ; Sarukhanyan, Edita ; Ebert, Regina ; Jakob, Franz ; Dandekar, Gudrun ; Naseem, Muhammad ; Liang, Chunguang ; Dandekar, Thomas

License: Creative Commons Attribution 4.0
PDF - Published Version
(3MB)

Date of publication of this fulltext: 21 Nov 2023 15:20

Alternative links to fulltext:DOI Publisher

Details

Preview

Export bibliographical data

Abstract

The signal modelling framework JimenaE simulates dynamically Boolean networks. In contrast to SQUAD, there is systematic and not just heuristic calculation of all system states. These specific features are not present in CellNetAnalyzer and BoolNet. JimenaE is an expert extension of Jimena, with new optimized code, network conversion into different formats, rapid convergence both for system state ...