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Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis

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Kaltdorf, Martin ; Breitenbach, Tim ; Karl, Stefan ; Fuchs, Maximilian ; Kessie, David Komla ; Psota, Eric ; Prelog, Martina ; Sarukhanyan, Edita ; Ebert, Regina ; Jakob, Franz ; Dandekar, Gudrun ; Naseem, Muhammad ; Liang, Chunguang ; Dandekar, Thomas
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Date of publication of this fulltext: 21 Nov 2023 15:20


The signal modelling framework JimenaE simulates dynamically Boolean networks. In contrast to SQUAD, there is systematic and not just heuristic calculation of all system states. These specific features are not present in CellNetAnalyzer and BoolNet. JimenaE is an expert extension of Jimena, with new optimized code, network conversion into different formats, rapid convergence both for system state ...


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