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Gateways to the FANTOM5 promoter level mammalian expression atlas

Lizio, Marina ; Harshbarger, Jayson ; Shimoji, Hisashi ; Severin, Jessica ; Kasukawa, Takeya ; Sahin, Serkan ; Abugessaisa, Imad ; Fukuda, Shiro ; Hori, Fumi ; Ishikawa-Kato, Sachi ; Mungall, Christopher J ; Arner, Erik ; Baillie, J Kenneth ; Bertin, Nicolas ; Bono, Hidemasa ; de Hoon, Michiel ; Diehl, Alexander D ; Dimont, Emmanuel ; Freeman, Tom C ; Fujieda, Kaori ; Hide, Winston ; Kaliyaperumal, Rajaram ; Katayama, Toshiaki ; Lassmann, Timo ; Meehan, Terrence F ; Nishikata, Koro ; Ono, Hiromasa ; Rehli, Michael ; Sandelin, Albin ; Schultes, Erik A ; ‘t Hoen, Peter AC ; Tatum, Zuotian ; Thompson, Mark ; Toyoda, Tetsuro ; Wright, Derek W ; Daub, Carsten O ; Itoh, Masayoshi ; Carninci, Piero ; Hayashizaki, Yoshihide ; Forrest, Alistair RR ; Kawaji, Hideya



Abstract

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and ...

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