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Penzkofer, Alfons ; Silapetere, Arita ; Hegemann, Peter

Reinvestigation of Absorption Spectroscopic Thermal Dynamics of Archaerhodopsin 3 Based Voltage Sensor Quasar1

Penzkofer, Alfons, Silapetere, Arita und Hegemann, Peter (2025) Reinvestigation of Absorption Spectroscopic Thermal Dynamics of Archaerhodopsin 3 Based Voltage Sensor Quasar1. Bioengineering 12 (12), S. 1293.

Veröffentlichungsdatum dieses Volltextes: 28 Nov 2025 17:10
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.78244


Zusammenfassung

The long-time absorption spectroscopic development of the genetically encoded microbial rhodopsin fluorescent voltage indicator QuasAr1 at room temperature in the dark was reinvestigated, mainly theoretically. The data analysis indicates protein aggregation within one day to some ten-nanometer sized Mie scattering particles. The absorption coefficient spectra can be deduced from measured ...

The long-time absorption spectroscopic development of the genetically encoded microbial rhodopsin fluorescent voltage indicator QuasAr1 at room temperature in the dark was reinvestigated, mainly theoretically. The data analysis indicates protein aggregation within one day to some ten-nanometer sized Mie scattering particles. The absorption coefficient spectra can be deduced from measured attenuation coefficient spectra by scattering contribution subtraction. The initially present protonated retinal Schiff base (PRSB) Ret_580 isomerized and then deprotonated to neutral retinal Schiff base (RSB). One part of Ret_580, Ret_580I, (fraction 43%), isomerized moderately fast to Ret_500 which then deprotonated to neutral retinal Schiff base Ret_405 (time constant ≈ 1000 h). The other part of Ret_580, Ret_580II, (fraction 57%), isomerized slowly to Ret_460 which deprotonated to Ret_340 (time constant ≈ 400 h). The dynamics are described by a differential equation system which is solved numerically. Reaction parameters are determined by fitting the simulations to the experimental results.



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Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftBioengineering
Verlag:MDPI
Band:12
Nummer des Zeitschriftenheftes oder des Kapitels:12
Seitenbereich:S. 1293
Datum24 November 2025
InstitutionenPhysik > Institut für Experimentelle und Angewandte Physik > Entpflichtete oder im Ruhestand befindliche Professoren > Arbeitsgruppe Alfons Penzkofer
Identifikationsnummer
WertTyp
10.3390/bioengineering12121293DOI
Stichwörter / KeywordsQuasAr1; Archaerhodopsin; fluorescent voltage sensor; absorption spectroscopic characterization; protein aggregation; Rayleigh and Mie scattering; numerical simulation of thermal dynamics; ground-state isomerization; ground-state deprotonation
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 530 Physik
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenJa
URN der UB Regensburgurn:nbn:de:bvb:355-epub-782441
Dokumenten-ID78244

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