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A naturally occurring standalone TrpB enzyme provides insights into allosteric communication within tryptophan synthase
Kinateder, Thomas
, Drexler, Lukas, Duran, Cristina, Osuna, Sílvia und Sterner, Reinhard
(2025)
A naturally occurring standalone TrpB enzyme provides insights into allosteric communication within tryptophan synthase.
Protein Science 34 (4), e70103.
Veröffentlichungsdatum dieses Volltextes: 19 Mrz 2025 10:50
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.76407
Zusammenfassung
Allosteric regulation of catalytic activity is a widespread property of multi-enzyme complexes. The tryptophan synthase is a prototypical allosteric enzyme where the constituting α (TrpA) and β (TrpB) subunits mutually activate each other in a manner that is incompletely understood. Experimental and computational studies have shown that LBCA-TrpB from the last bacterial common ancestor contains ...
Allosteric regulation of catalytic activity is a widespread property of multi-enzyme complexes. The tryptophan synthase is a prototypical allosteric enzyme where the constituting α (TrpA) and β (TrpB) subunits mutually activate each other in a manner that is incompletely understood. Experimental and computational studies have shown that LBCA-TrpB from the last bacterial common ancestor contains six residues (Res6) distal from the active site that allow for high stand-alone catalytic activity in the absence of a TrpA subunit. In the present study, a database search revealed that Res6 is also present in the extant plTrpB from Pelodictyon luteolum. The plTrpB enzyme showed a high stand-alone activity and only a moderate activation by plTrpA. The replacement of LBCA-Res6 in plTrpB with the consensus residues from a multiple sequence alignment yielded plTrpB-con, which showed a dramatically decreased stand-alone activity but was strongly stimulated by plTrpA. These findings suggest that the effect of these six key allosteric residues is largely independent of the protein context within a specific TrpB enzyme. Analysis of the conformational landscapes of plTrpB and plTrpB-con revealed that plTrpB in isolation displays efficient closure of both the active site and the communication (COMM) domain. In contrast, these catalytically competent states are destabilized in plTrpB-con but can be recovered by the addition of plTrpA. A correlation-based shortest path map (SPM) analysis reveals that the catalytically and allosterically relevant domains—specifically, the COMM domain in TrpB and loops 2 and 6 in TrpA—are tightly interconnected exclusively in plTrpA:plTrpB-con.
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| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | Protein Science | ||||
| Verlag: | Wiley | ||||
|---|---|---|---|---|---|
| Band: | 34 | ||||
| Nummer des Zeitschriftenheftes oder des Kapitels: | 4 | ||||
| Seitenbereich: | e70103 | ||||
| Datum | 18 März 2025 | ||||
| Institutionen | Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Reinhard Sterner | ||||
| Identifikationsnummer |
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| Stichwörter / Keywords | allostery, molecular dynamics simulations, multi-enzyme complexes, shortest path map, stand-alone enzyme, tryptophan synthase | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 500 Naturwissenschaften 500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Zum Teil | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-764073 | ||||
| Dokumenten-ID | 76407 |
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