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A comparative categorization of protein function encoded in bacterial or archeal genomic islands

Merkl, Rainer (2006) A comparative categorization of protein function encoded in bacterial or archeal genomic islands. J Mol Evol 62 (1), pp. 1-14.

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Abstract

Genomes of prokaryotes harbor genomic islands (GIs), which are frequently acquired via horizontal gene transfer (HGT). Here I present an analysis of GIs with respect to gene-encoded functions. GIs were identified by statistical analysis of codon usage and clustering. Genes classified as putatively alien (pA) or putatively native (pN) were categorized according to the COG database. Among pA and pN ...

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Item type:Article
Date:2006
Institutions:Biology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Rainer Merkl
Identification Number:
ValueType
16341468PubMed ID
10.1007/s00239-004-0311-5DOI
Classification:
NotationType
Amino Acid SequenceMESH
Archaeal Proteins/geneticsMESH
Archaeal Proteins/physiology*MESH
Bacterial Proteins/geneticsMESH
Bacterial Proteins/physiology*MESH
Genomic Islands*MESH
Molecular Sequence DataMESH
PhylogenyMESH
# # Regulatory Elements, TranscriptionalMESH
Keywords:Genomic islands - Horizontal gene transfer - Lateral gene transfer - Clusters of Orthologous Groups of genes - Xenologous genes
Dewey Decimal Classification:500 Science > 570 Life sciences
Status:Published
Refereed:Yes, this version has been refereed
Created at the University of Regensburg:Yes
Item ID:10923
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