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GO4genome: A prokaryotic phylogeny based on genome organisation

Merkl, Rainer and Wiezer, Arnim (2009) GO4genome: A prokaryotic phylogeny based on genome organisation. Journal of Molecular Evolution 68 (5), pp. 550-562.

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Abstract

Determining the phylogeny of closely related prokaryotes may fail in an analysis of rRNA or a small set of sequences. Whole-genome phylogeny utilizes the maximally available sample space. For a precise determination of genome similarity, two aspects have to be considered when developing an algorithm of whole-genome phylogeny: (1) gene order conservation is a more precise signal than gene content; ...

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Item type:Article
Date:2009
Institutions:Biology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Rainer Merkl
Identification Number:
ValueType
19436929PubMed ID
10.1007/s00239-009-9233-6DOI
Classification:
NotationType
Algorithms*MESH
Computational Biology/methods*MESH
Escherichia coli/geneticsMESH
Gene OrderMESH
Gene Transfer, HorizontalMESH
Genes, BacterialMESH
Genome, Archaeal/genetics*MESH
Genome, Bacterial/genetics*MESH
Methanosarcina/geneticsMESH
Phylogeny*MESH
Prokaryotic Cells/metabolism*MESH
Streptococcus/geneticsMESH
Yersinia/geneticsMESH
Dewey Decimal Classification:500 Science > 570 Life sciences
Status:Published
Refereed:Yes, this version has been refereed
Created at the University of Regensburg:Partially
Item ID:10928
Owner only: item control page
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