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Protein design on computers. Five new proteins: Shpilka, Grendel, Fingerclasp, Leather, and Aida

Sander, Chris ; Vriend, Gerrit ; Bazan, Fernando ; Horovitz, Amnon ; Nakamura, Haruki ; Ribas, Luis ; Finkelstein, Alexei V. ; Lockhart, Andrew ; Merkl, Rainer ; Perry, L. Jeanne ; Emery, Stephen C. ; Gaboriaud, Christine ; Marks, Cara ; Moult, John ; Verlinde, Christophe ; Eberhard, Marc ; Elofsson, Arne ; Hubbard, Tim J. P. ; Regan, Lynne ; Banks, Jay ; Jappelli, Roberto ; Lesk, Arthur M. ; Tramontano, Anna



Abstract

What is the current state of the art in protein design? This question was approached in a recent two-week protein design workshop sponsored by EMBO and held at the EMBL in Heidelberg. The goals were to test available design tools and to explore new design strategies. Five novel proteins were designed: Shpilka, a sandwich of two four-stranded beta-sheets, a scaffold on which to explore variations ...

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