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OrderedList - a bioconductor package for detecting similarity in ordered gene lists

Lottaz, Claudio, Yang, Xinan, Scheid, Stefanie and Spang, Rainer (2006) OrderedList - a bioconductor package for detecting similarity in ordered gene lists. Bioinformatics 22 (18), pp. 2315-2316.

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Abstract

OrderedList is a Bioconductor compliant package for meta-analysis based on ordered gene lists like those resulting from differential gene expression analysis. Our package quantifies the similarity between gene lists. The significance of the similarity score is estimated from random scores computed on perturbed data. OrderedList illustrates list similarity in intuitive plots and determines the score-driving genes for further analysis.


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Item type:Article
Date:26 June 2006
Institutions:Medicine > Institut für Funktionelle Genomik > Lehrstuhl für Statistische Bioinformatik (Prof. Spang)
Identification Number:
ValueType
10.1093/bioinformatics/btl385DOI
16844712PubMed ID
Keywords:"Algorithms", "Artificial Intelligence", "Computer Simulation", "Gene Expression Profiling", "Models, Biological", "Multigene Family", "Oligonucleotide Array Sequence Analysis", "Pattern Recognition, Automated", "Software"
Dewey Decimal Classification:000 Computer science, information & general works > 004 Computer science
600 Technology > 610 Medical sciences Medicine
Status:Published
Refereed:Yes, this version has been refereed
Created at the University of Regensburg:Yes
Item ID:32952
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