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Loss-function learning for digital tissue deconvolution

Görtler, Franziska ; Solbrig, Stefan ; Wettig, Tilo ; Oefner, Peter J. ; Spang, Rainer ; Altenbuchinger, Michael

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Abstract

The gene expression profile of a tissue averages the expression profiles of all cells in this tissue. Digital tissue deconvolution (DTD) addresses the following inverse problem: Given the expression profile $y$ of a tissue, what is the cellular composition $c$ of that tissue? If $X$ is a matrix whose columns are reference profiles of individual cell types, the composition $c$ can be computed by ...

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