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An integrated expression atlas of miRNAs and their promoters in human and mouse

de Rie, Derek ; Abugessaisa, Imad ; Alam, Tanvir ; Arner, Erik ; Arner, Peter ; Ashoor, Haitham ; Åström, Gaby ; Babina, Magda ; Bertin, Nicolas ; Burroughs, A. Maxwell ; Carlisle, Ailsa J. ; Daub, Carsten O. ; Detmar, Michael ; Deviatiiarov, Ruslan ; Fort, Alexandre ; Gebhard, Claudia ; Goldowitz, Daniel ; Guhl, Sven ; Ha, Thomas J. ; Harshbarger, Jayson ; Hasegawa, Akira ; Hashimoto, Kosuke ; Herlyn, Meenhard ; Heutink, Peter ; Hitchens, Kelly J. ; Hon, Chung Chau ; Huang, Edward ; Ishizu, Yuri ; Kai, Chieko ; Kasukawa, Takeya ; Klinken, Peter ; Lassmann, Timo ; Lecellier, Charles-Henri ; Lee, Weonju ; Lizio, Marina ; Makeev, Vsevolod ; Mathelier, Anthony ; Medvedeva, Yulia A. ; Mejhert, Niklas ; Mungall, Christopher J. ; Noma, Shohei ; Ohshima, Mitsuhiro ; Okada-Hatakeyama, Mariko ; Persson, Helena ; Rizzu, Patrizia ; Roudnicky, Filip ; Sætrom, Pål ; Sato, Hiroki ; Severin, Jessica ; Shin, Jay W. ; Swoboda, Rolf K. ; Tarui, Hiroshi ; Toyoda, Hiroo ; Vitting-Seerup, Kristoffer ; Winteringham, Louise ; Yamaguchi, Yoko ; Yasuzawa, Kayoko ; Yoneda, Misako ; Yumoto, Noriko ; Zabierowski, Susan ; Zhang, Peter G. ; Wells, Christine A. ; Summers, Kim M. ; Kawaji, Hideya ; Sandelin, Albin ; Rehli, Michael ; Hayashizaki, Yoshihide ; Carninci, Piero ; Forrest, Alistair R. R. ; de Hoon, Michiel J. L.



Abstract

MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As part of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) project, we created an integrated expression atlas of miRNAs and their promoters by deep-sequencing 492 short RNA (sRNA) libraries, with matching Cap Analysis Gene Expression (CAGE) data, from 396 human and 47 mouse RNA ...

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