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Beck Erlach, Markus ; Köhler, Jörg ; Munte, Claudia E. ; Kremer, Werner ; Kalbitzer, Hans Robert ; ;

Pressure dependence of side chain 1H and 15N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2

Beck Erlach, Markus, Köhler, Jörg, Munte, Claudia E., Kremer, Werner, Kalbitzer, Hans Robert , make_name_string expected hash reference und make_name_string expected hash reference (2020) Pressure dependence of side chain 1H and 15N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2. Journal of Biomolecular NMR 74, S. 381-399.

Veröffentlichungsdatum dieses Volltextes: 09 Feb 2021 11:54
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.44828


Zusammenfassung

For interpreting the pressure induced shifts of resonance lines of folded as well as unfolded proteins the availability of data from well-defined model systems is indispensable. Here, we report the pressure dependence of(1)H and(15)N chemical shifts of the side chain atoms in the protected tetrapeptides Ac-Gly-Gly-Xxx-Ala-NH2(Xxx is one of the 20 canonical amino acids) measured at 800 MHz proton ...

For interpreting the pressure induced shifts of resonance lines of folded as well as unfolded proteins the availability of data from well-defined model systems is indispensable. Here, we report the pressure dependence of(1)H and(15)N chemical shifts of the side chain atoms in the protected tetrapeptides Ac-Gly-Gly-Xxx-Ala-NH2(Xxx is one of the 20 canonical amino acids) measured at 800 MHz proton frequency. As observed earlier for other nuclei the chemical shifts of the side chain nuclei have a nonlinear dependence on pressure in the range from 0.1 to 200 MPa. The pressure response is described by a second degree polynomial with the pressure coefficientsB(1)andB(2)that are dependent on the atom type and type of amino acid studied. A number of resonances could be assigned stereospecifically including the(1)H and(15)N resonances of the guanidine group of arginine. In addition, stereoselectively isotope labeled SAIL amino acids were used to support the stereochemical assignments. The random-coil pressure coefficients are also dependent on the neighbor in the sequence as an analysis of the data shows. For H(alpha)and H(N)correction factors for different amino acids were derived. In addition, a simple correction of compression effects in thermodynamic analysis of structural transitions in proteins was derived on the basis of random-coil pressure coefficients.



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Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftJournal of Biomolecular NMR
Verlag:Springer
Ort der Veröffentlichung:DORDRECHT
Band:74
Seitenbereich:S. 381-399
Datum2020
InstitutionenBiologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Dr. Hans Robert Kalbitzer
Identifikationsnummer
WertTyp
10.1007/s10858-020-00326-wDOI
Stichwörter / KeywordsN-15 CHEMICAL-SHIFTS; GLY-X-ALA; STEREOSPECIFIC ASSIGNMENT; H-1-NMR PARAMETERS; PROTEIN-STRUCTURE; AQUEOUS-SOLUTIONS; AMIDE PROTONS; AMINO-ACIDS; H-1; TETRAPEPTIDES; High pressure NMR; Pressure coefficients; model peptides; Random-coil; Chemical shift; 1H; 15N; multi-state equilibria
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenJa
URN der UB Regensburgurn:nbn:de:bvb:355-epub-448282
Dokumenten-ID44828

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