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AMIGOS: a method for the inspection of genomic organisation or structure and its application to characterise and dissect conserved gene arrangements

Merkl, Rainer (2006) AMIGOS: a method for the inspection of genomic organisation or structure and its application to characterise and dissect conserved gene arrangements. In Silico Biology 6, 0027.

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Other URL: http://www.bioinfo.de/isb/2006060027/


Abstract

In order to identify and to characterise gene clusters conserved in microbial genomes, the algorithm AMIGOS was developed. It is based on a categorisation of genes using a predefined set of gene functions (GFs). After the categorisation of all genes of a genome and based on their location on a replicon, distances between GFs were determined and stored in genome-specific matrices. These matrices ...

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Item type:Article
Date:2006
Institutions:Biology, Preclinical Medicine > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Rainer Merkl
Identification Number:
ValueType
16922692PubMed ID
Classification:
NotationType
Algorithms*MESH
ClassificationMESH
Cluster AnalysisMESH
Conserved SequenceMESH
Databases, GeneticMESH
Escherichia coli/geneticsMESH
Genetics, Microbial/methods*MESH
Genetics, Microbial/statistics & numerical dataMESH
Genome, ArchaealMESH
Genome, BacterialMESH
Genomics/methods*MESH
Genomics/statistics & numerical dataMESH
Multigene FamilyMESH
OperonMESH
Dewey Decimal Classification:500 Science > 570 Life sciences
Status:Published
Refereed:Yes, this version has been refereed
Created at the University of Regensburg:Yes
Item ID:10922
Owner only: item control page
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