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Experimental assessment of the importance of amino acid positions identified by an entropy-based correlation analysis of multiple sequence alignments

Dietrich, Susanne ; Borst, Nadine ; Schlee, Sandra ; Schneider, Daniel ; Janda, Jan-Oliver ; Sterner, Reinhard ; Merkl, Rainer


The analysis of a multiple sequence alignment (MSA) with correlation methods identifies for a protein pairs of residue-positions whose occupation with amino acids change in a concerted manner. It is plausible to assume that positions that are a member of many such correlation pairs are important for protein function or stability. We have used the algorithm H2r to identify positions k in the MSAs ...


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