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Software schematics
Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Software schematics. [Bild]Veröffentlichungsdatum dieses Volltextes: 07 Apr 2015 10:23
Bild
DOI zum Zitieren dieses Dokuments: 10.5283/epub.31602
Zusammenfassung
The experimenter enters information (in red) about the fly and the platform (semi-automatically) into the tracker application (BuriTrack). The tracker saves this information along with a time stamp in an XML file. Online analysis of the video leads to the extraction of the position of the fly over time, which is directly saved to the data file. The analysis software (CeTrAn) then reads a text ...
The experimenter enters information (in red) about the fly and the platform (semi-automatically) into the tracker application (BuriTrack). The tracker saves this information along with a time stamp in an XML file. Online analysis of the video leads to the extraction of the position of the fly over time, which is directly saved to the data file. The analysis software (CeTrAn) then reads a text file indicating the path to the XML file and the fly grouping information. It then automatically imports the data, transforms it into an easily workable class of data (ltraj) and performs the analyses following different variables the experimenter can set (in red). As outputs, CeTrAn writes R workspaces (before and after the analysis), a csv file of the computed parameters and pdf files where those metrics are plotted against the group factor.
Alternative Links zum Volltext
Beteiligte Einrichtungen
Verknüpfung von Datensätzen
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Colomb, J., Reiter, L., Blaszkiewicz, J., Wessnitzer, J. und Brembs, Björn (2012) Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan’s Paradigm with and without Visual Targets. PLoS ONE 7 (8), e42247.Vorschau
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VorschauVorschauColomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets. [Bild]Vorschau -
Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Inexpensive Hardware for Buridan's paradigm. [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Software schematics. [Bild] [Gegenwärtig angezeigt]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Calculation of angles and number of walks. [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Activity calculations using different computations give similar results for endogenous locomotion and computer-generated data (grouping codes given below the graph). [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Trajectory parameters of real flies and computer-generated data (grouping codes given below the graph). [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Correlation plot for the different groups of data. [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Transition plots for the different groups of data. [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Fly trajectory metrics for endogenous locomotion (gray bars), Buridan's paradigm with narrow stripes (white bars) or wide stripes (striped pattern). [Bild]Vorschau
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Colomb, Julien, Reiter, Lutz, Blaszkiewicz, Jedrzej, Wessnitzer, Jan und Brembs, Björn (2012) Reduced state space of fly locomotion behavior after PCA separates the three experimental conditions. [Bild]Vorschau
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Details
| Dokumentenart | Bild | ||||
| Titel eines Journals oder einer Zeitschrift | PLoS ONE | ||||
| Verlag: | PubMed Central | ||||
|---|---|---|---|---|---|
| Band: | 7 | ||||
| Nummer des Zeitschriftenheftes oder des Kapitels: | 8 | ||||
| Seitenbereich: | e42247 | ||||
| Datum | 9 August 2012 | ||||
| Institutionen | Biologie und Vorklinische Medizin > Institut für Zoologie > Neurogenetik (Prof. Dr. Björn Brembs) | ||||
| Identifikationsnummer |
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| Stichwörter / Keywords | Computational biology, neuroscience, computer science | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie 500 Naturwissenschaften und Mathematik > 590 Tiere (Zoologie) | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Nein | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-316029 | ||||
| Dokumenten-ID | 31602 |
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