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A suite of ¹⁹F based relaxation dispersion experiments to assess biomolecular motions
Overbeck, Jan H., Sprangers, Remco und Kremer, Werner (2020) A suite of ¹⁹F based relaxation dispersion experiments to assess biomolecular motions. Journal of Biomolecular NMR 74, S. 753-766.Veröffentlichungsdatum dieses Volltextes: 09 Feb 2021 13:17
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.44774
Zusammenfassung
Proteins and nucleic acids are highly dynamic bio-molecules that can populate a variety of conformational states. NMR relaxation dispersion (RD) methods are uniquely suited to quantify the associated kinetic and thermodynamic parameters. Here, we present a consistent suite of F-19-based CPMG, on-resonance R-1 rho and off-resonance R-1 rho RD experiments. We validate these experiments by studying ...
Proteins and nucleic acids are highly dynamic bio-molecules that can populate a variety of conformational states. NMR relaxation dispersion (RD) methods are uniquely suited to quantify the associated kinetic and thermodynamic parameters. Here, we present a consistent suite of F-19-based CPMG, on-resonance R-1 rho and off-resonance R-1 rho RD experiments. We validate these experiments by studying the unfolding transition of a 7.5 kDa cold shock protein. Furthermore we show that the F-19 RD experiments are applicable to very large molecular machines by quantifying dynamics in the 360 kDa half-proteasome. Our approach significantly extends the timescale of chemical exchange that can be studied with F-19 RD, adds robustness to the extraction of exchange parameters and can determine the absolute chemical shifts of excited states. Importantly, due to the simplicity of F-19 NMR spectra, it is possible to record complete datasets within hours on samples that are of very low costs. This makes the presented experiments ideally suited to complement static structural information from cryo-EM and X-ray crystallography with insights into functionally relevant motions.
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| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | Journal of Biomolecular NMR | ||||
| Verlag: | Springer | ||||
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| Ort der Veröffentlichung: | DORDRECHT | ||||
| Band: | 74 | ||||
| Seitenbereich: | S. 753-766 | ||||
| Datum | 30 September 2020 | ||||
| Institutionen | Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Remco Sprangers | ||||
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| Stichwörter / Keywords | COLD-SHOCK PROTEIN; NUCLEAR-MAGNETIC-RESONANCE; MOLECULAR-WEIGHT PROTEINS; TIME-SCALE DYNAMICS; METHYL-GROUP PROBES; CHEMICAL-EXCHANGE; EXCITED-STATES; R-1-RHO RELAXATION; NMR-SPECTROSCOPY; CAVITY MUTANT; Fluorine; Large complexes; Protein folding; Relaxation dispersion; Structural dynamics | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie 500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Unbekannt / Keine Angabe | ||||
| An der Universität Regensburg entstanden | Ja | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-447743 | ||||
| Dokumenten-ID | 44774 |
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