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Refinement of anomalous dispersion correction parameters in single-crystal structure determinations
Meurer, Florian
, Dolomanov, Oleg V., Hennig, Christoph
, Peyerimhoff, Norbert
, Kleemiss, Florian
, Puschmann, Horst und Bodensteiner, Michael
(2022)
Refinement of anomalous dispersion correction parameters in single-crystal structure determinations.
IUCrJ / International Union of Crystallography 9 (5), S. 604-609.
Veröffentlichungsdatum dieses Volltextes: 29 Sep 2022 07:51
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.52938
Zusammenfassung
Correcting for anomalous dispersion is part of any refinement of an X-ray diffraction crystal structure determination. The procedure takes the inelastic scattering in the diffraction experiment into account. This X-ray absorption effect is specific to each chemical compound and is particularly sensitive to radiation energies in the region of the absorption edges of the elements in the compound. ...
Correcting for anomalous dispersion is part of any refinement of an X-ray diffraction crystal structure determination. The procedure takes the inelastic scattering in the diffraction experiment into account. This X-ray absorption effect is specific to each chemical compound and is particularly sensitive to radiation energies in the region of the absorption edges of the elements in the compound. Therefore, the widely used tabulated values for these corrections can only be approximations as they are based on calculations for isolated atoms. Features of the unique spatial and electronic environment that are directly related to the anomalous dispersion are ignored, although these can be observed spectroscopically. This significantly affects the fit between the crystallographic model and the measured intensities when the excitation wavelength in an X-ray diffraction experiment is close to an element's absorption edge. Herein, we report on synchrotron multi-wavelength single-crystal X-ray diffraction, as well as X-ray absorption spectroscopy experiments which we performed on the molecular compound Mo(CO)(6) at energies around the molybdenum K edge. The dispersive (f') and absorptive (f'') terms of the anomalous dispersion can be refined as independent parameters in the full-matrix least-squares refinement. This procedure has been implemented as a new feature in the well-established OLEX2 software suite. These refined parameters are in good agreement with the independently recorded X-ray absorption spectrum. The resulting crystallographic models show significant improvement compared to those employing tabulated values.
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Details
| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | IUCrJ / International Union of Crystallography | ||||
| Verlag: | INT UNION CRYSTALLOGRAPHY | ||||
|---|---|---|---|---|---|
| Ort der Veröffentlichung: | CHESTER | ||||
| Band: | 9 | ||||
| Nummer des Zeitschriftenheftes oder des Kapitels: | 5 | ||||
| Seitenbereich: | S. 604-609 | ||||
| Datum | 20 Juli 2022 | ||||
| Institutionen | Chemie und Pharmazie > Zentrale Analytik | ||||
| Projekte |
Gefördert von:
Deutsche Forschungsgemeinschaft (DFG)
(470146201)
| ||||
| Identifikationsnummer |
| ||||
| Stichwörter / Keywords | X-RAY-DIFFRACTION; SCATTERING FACTORS; ABSORPTION; ATOM; REFLECTION; anomalous dispersion; resonant scattering; diffraction spectroscopy; correction of the crystallographic model; synchrotron | ||||
| Dewey-Dezimal-Klassifikation | 500 Naturwissenschaften und Mathematik > 540 Chemie 600 Technik, Medizin, angewandte Wissenschaften > 615 Pharmazie | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Zum Teil | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-529382 | ||||
| Dokumenten-ID | 52938 |
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