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Kinateder, Thomas ; Drexler, Lukas ; Duran, Cristina ; Osuna, Sílvia ; Sterner, Reinhard

A naturally occurring standalone TrpB enzyme provides insights into allosteric communication within tryptophan synthase

Artikel

Kinateder, Thomas , Drexler, Lukas, Duran, Cristina, Osuna, Sílvia und Sterner, Reinhard (2025) A naturally occurring standalone TrpB enzyme provides insights into allosteric communication within tryptophan synthase. Protein Science 34 (4), e70103.

DOI zum Zitieren dieses Dokuments: 10.5283/epub.76407


Zusammenfassung

Allosteric regulation of catalytic activity is a widespread property of multi-enzyme complexes. The tryptophan synthase is a prototypical allosteric enzyme where the constituting α (TrpA) and β (TrpB) subunits mutually activate each other in a manner that is incompletely understood. Experimental and computational studies have shown that LBCA-TrpB from the last bacterial common ancestor contains ...

Allosteric regulation of catalytic activity is a widespread property of multi-enzyme complexes. The tryptophan synthase is a prototypical allosteric enzyme where the constituting α (TrpA) and β (TrpB) subunits mutually activate each other in a manner that is incompletely understood. Experimental and computational studies have shown that LBCA-TrpB from the last bacterial common ancestor contains six residues (Res6) distal from the active site that allow for high stand-alone catalytic activity in the absence of a TrpA subunit. In the present study, a database search revealed that Res6 is also present in the extant plTrpB from Pelodictyon luteolum. The plTrpB enzyme showed a high stand-alone activity and only a moderate activation by plTrpA. The replacement of LBCA-Res6 in plTrpB with the consensus residues from a multiple sequence alignment yielded plTrpB-con, which showed a dramatically decreased stand-alone activity but was strongly stimulated by plTrpA. These findings suggest that the effect of these six key allosteric residues is largely independent of the protein context within a specific TrpB enzyme. Analysis of the conformational landscapes of plTrpB and plTrpB-con revealed that plTrpB in isolation displays efficient closure of both the active site and the communication (COMM) domain. In contrast, these catalytically competent states are destabilized in plTrpB-con but can be recovered by the addition of plTrpA. A correlation-based shortest path map (SPM) analysis reveals that the catalytically and allosterically relevant domains—specifically, the COMM domain in TrpB and loops 2 and 6 in TrpA—are tightly interconnected exclusively in plTrpA:plTrpB-con.



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Details

DokumentenartArtikel
Titel eines Journals oder einer ZeitschriftProtein Science
VerlagWiley
Open Access ArtDEAL (Wiley)
Band34
Nummer des Zeitschriftenheftes oder des Kapitels4
Seitenbereiche70103
Datum18 März 2025
Veröffentlichungsdatum19 Mrz 2025 10:50
InstitutionenBiologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie
Biologie und Vorklinische Medizin > Institut für Biophysik und physikalische Biochemie > Prof. Dr. Reinhard Sterner
Identifikationsnummer
WertTyp
10.1002/pro.70103DOI
Stichwörter / Keywordsallostery, molecular dynamics simulations, multi-enzyme complexes, shortest path map, stand-alone enzyme, tryptophan synthase
Dewey-Dezimal-Klassifikation500 Naturwissenschaften und Mathematik > 500 Naturwissenschaften
500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie
StatusVeröffentlicht
BegutachtetJa, diese Version wurde begutachtet
An der Universität Regensburg entstandenZum Teil
URN der UB Regensburgurn:nbn:de:bvb:355-epub-764073
Dokumenten-ID76407

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