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Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
Berijanian, Maryam, Schaadt, Nadine S., Huang, Boqiang, Lotz, Johannes, Feuerhake, Friedrich und Merhof, Dorit (2023) Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy. Journal of Pathology Informatics 14, S. 100195.Veröffentlichungsdatum dieses Volltextes: 13 Feb 2023 17:22
Artikel
DOI zum Zitieren dieses Dokuments: 10.5283/epub.53737
Zusammenfassung
Background Deep learning tasks, which require large numbers of images, are widely applied in digital pathology. This poses challenges especially for supervised tasks since manual image annotation is an expensive and laborious process. This situation deteriorates even more in the case of a large variability of images. Coping with this problem requires methods such as image augmentation and ...
Background
Deep learning tasks, which require large numbers of images, are widely applied in digital pathology. This poses challenges especially for supervised tasks since manual image annotation is an expensive and laborious process. This situation deteriorates even more in the case of a large variability of images. Coping with this problem requires methods such as image augmentation and synthetic image generation. In this regard, unsupervised stain translation via GANs has gained much attention recently, but a separate network must be trained for each pair of source and target domains. This work enables unsupervised many-to-many translation of histopathological stains with a single network while seeking to maintain the shape and structure of the tissues.
Methods
StarGAN-v2 is adapted for unsupervised many-to-many stain translation of histopathology images of breast tissues. An edge detector is incorporated to motivate the network to maintain the shape and structure of the tissues and to have an edge-preserving translation. Additionally, a subjective test is conducted on medical and technical experts in the field of digital pathology to evaluate the quality of generated images and to verify that they are indistinguishable from real images. As a proof of concept, breast cancer classifiers are trained with and without the generated images to quantify the effect of image augmentation using the synthetized images on classification accuracy.
Results
The results show that adding an edge detector helps to improve the quality of translated images and to preserve the general structure of tissues. Quality control and subjective tests on our medical and technical experts show that the real and artificial images cannot be distinguished, thereby confirming that the synthetic images are technically plausible. Moreover, this research shows that, by augmenting the training dataset with the outputs of the proposed stain translation method, the accuracy of breast cancer classifier with ResNet-50 and VGG-16 improves by 8.0% and 9.3%, respectively.
Conclusions
This research indicates that a translation from an arbitrary source stain to other stains can be performed effectively within the proposed framework. The generated images are realistic and could be employed to train deep neural networks to improve their performance and cope with the problem of insufficient numbers of annotated images.
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Details
| Dokumentenart | Artikel | ||||
| Titel eines Journals oder einer Zeitschrift | Journal of Pathology Informatics | ||||
| Verlag: | Elsevier | ||||
|---|---|---|---|---|---|
| Band: | 14 | ||||
| Seitenbereich: | S. 100195 | ||||
| Datum | Januar 2023 | ||||
| Institutionen | Informatik und Data Science > Fachbereich Bioinformatik > Lehrstuhl für Bildverarbeitung (Prof. Dr.-Ing. Dorit Merhof) | ||||
| Identifikationsnummer |
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| Stichwörter / Keywords | Deep learning, Stain translation, Unsupervised, Digital pathology, Breast cancer classifier, Adversarial networks | ||||
| Dewey-Dezimal-Klassifikation | 000 Informatik, Informationswissenschaft, allgemeine Werke > 004 Informatik | ||||
| Status | Veröffentlicht | ||||
| Begutachtet | Ja, diese Version wurde begutachtet | ||||
| An der Universität Regensburg entstanden | Ja | ||||
| URN der UB Regensburg | urn:nbn:de:bvb:355-epub-537371 | ||||
| Dokumenten-ID | 53737 |
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