Bibliography of the Universität Regensburg

Do, Van Hoan, Lan Tran, Thi Phuong and Canzar, Stefan (2026) GraphBG: Fast Bayesian Domain Detection via Spectral Graph Convolutions for Multi-slice and Multi-modal Spatial Transcriptomics. bioRxiv. Fulltext not available.

Li, Danrong, Ko, Young Kun and Canzar, Stefan (2025) CAMP: Coreset Accelerated Metacell Partitioning enables scalable analysis of single-cell data. bioRxiv. Fulltext not available.

Borozan, Bartol, Prusina, Tomislav, Borozan, Luka, Ševerdija, Domagoj, Rojas Ringeling, Francisca, Matijević, Domagoj and Canzar, Stefan (2025) Optimal marker genes for c-separated cell types with SepSolve. Genome Research 35 (12), pp. 2770-2780.

Yoo, DongAhn, Rhie, Arang, Hebbar, Prajna, Antonacci, Francesca, Logsdon, Glennis A., Solar, Steven J., Antipov, Dmitry, Pickett, Brandon D., Safonova, Yana, Montinaro, Francesco, Luo, Yanting, Malukiewicz, Joanna, Storer, Jessica M., Lin, Jiadong, Sequeira, Abigail N., Mangan, Riley J., Hickey, Glenn, Monfort Anez, Graciela, Balachandran, Parithi, Bankevich, Anton, Beck, Christine R., Biddanda, Arjun, Borchers, Matthew, Bouffard, Gerard G., Brannan, Emry, Brooks, Shelise Y., Carbone, Lucia, Carrel, Laura, Chan, Agnes P., Crawford, Juyun, Diekhans, Mark, Engelbrecht, Eric, Feschotte, Cedric, Formenti, Giulio, Garcia, Gage H., de Gennaro, Luciana, Gilbert, David, Green, Richard E., Guarracino, Andrea, Gupta, Ishaan, Haddad, Diana, Han, Junmin, Harris, Robert S., Hartley, Gabrielle A., Harvey, William T., Hiller, Michael, Hoekzema, Kendra, Houck, Marlys L., Jeong, Hyeonsoo, Kamali, Kaivan, Kellis, Manolis, Kille, Bryce, Lee, Chul, Lee, Youngho, Lees, William, Lewis, Alexandra P., Li, Qiuhui, Loftus, Mark, Loh, Yong Hwee Eddie, Loucks, Hailey, Ma, Jian, Mao, Yafei, Martinez, Juan F. I., Masterson, Patrick, McCoy, Rajiv C., McGrath, Barbara, McKinney, Sean, Meyer, Britta S., Miga, Karen H., Mohanty, Saswat K., Munson, Katherine M., Pal, Karol, Pennell, Matt, Pevzner, Pavel A., Porubsky, David, Potapova, Tamara, Ringeling, Francisca R., Rocha, Joana L., Ryder, Oliver A., Sacco, Samuel, Saha, Swati, Sasaki, Takayo, Schatz, Michael C., Schork, Nicholas J., Shanks, Cole, Smeds, Linnéa, Son, Dongmin R., Steiner, Cynthia, Sweeten, Alexander P., Tassia, Michael G., Thibaud-Nissen, Françoise, Torres-González, Edmundo, Trivedi, Mihir, Wei, Wenjie, Wertz, Julie, Yang, Muyu, Zhang, Panpan, Zhang, Shilong, Zhang, Yang, Zhang, Zhenmiao, Zhao, Sarah A., Zhu, Yixin, Jarvis, Erich D., Gerton, Jennifer L., Rivas-González, Iker, Paten, Benedict, Szpiech, Zachary A., Huber, Christian D., Lenz, Tobias L., Konkel, Miriam K., Yi, Soojin V., Canzar, Stefan, Watson, Corey T., Sudmant, Peter H., Molloy, Erin, Garrison, Erik, Lowe, Craig B., Ventura, Mario, O’Neill, Rachel J., Koren, Sergey, Makova, Kateryna D., Phillippy, Adam M. and Eichler, Evan E. (2025) Complete sequencing of ape genomes. Nature 641 (8062), pp. 401-418. Fulltext not available.

Canzar, Stefan, Do, Van Hoan, Jelić, Slobodan, Laue, Sören, Matijević, Domagoj and Prusina, Tomislav (2024) Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms for Molecular Biology 19 (1).

Iyer, Dhanur P., Moyon, Lambert, Wittler, Lars, Cheng, Chieh-Yu, Ringeling, Francisca R., Canzar, Stefan, Marsico, Annalisa and Bulut-Karslioğlu, Aydan (2024) Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), pp. 572-589. Fulltext not available.

Blažević, Mislav, Canzar, Stefan, Elbassioni, Khaled and Matijević, Domagoj (2024) Anti Tai mapping for unordered labeled trees. Information Processing Letters 185, p. 106454. Fulltext not available.

Sun, Jianfeng, Philpott, Martin, Loi, Danson, Li, Shuang, Monteagudo-Mesas, Pablo, Hoffman, Gabriela, Robson, Jonathan, Mehta, Neelam, Gamble, Vicki, Brown, Tom, Brown, Tom, Canzar, Stefan, Oppermann, Udo and Cribbs, Adam P. (2024) Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules. Nature Methods 21 (3), pp. 401-405. Fulltext not available.

Borozan, Luka, Rojas Ringeling, Francisca, Kao, Shao-Yen, Nikonova, Elena, Monteagudo-Mesas, Pablo, Matijević, Domagoj, Spletter, Maria L, Canzar, Stefan and Ponty, Yann (2023) Counting pseudoalignments to novel splicing events. Bioinformatics 39 (7). Fulltext not available.

Rojas Ringeling, Francisca and Canzar, Stefan (2023) Algorithmen zum Entschlüsseln der Genregulation. Blick in die Wissenschaft : Forschungsmagazin der Universität Regensburg 31 (44/45), pp. 46-48. Fulltext not available.

Borozan, B., Borozan, L., Ševerdija, D., Matijević, D. and Canzar, Stefan (2023) Fortuna Detects Novel Splicing in Drosophila scRNASeq Data. In: 2023 46th MIPRO ICT and Electronics Convention (MIPRO). IEEE, pp. 410-415. ISBN 978-953-233-104-2, 978-1-6654-9420-5. Fulltext not available.

Do, Van Hoan and Canzar, Stefan (2023) Identifying Cell Types in Single-Cell Multimodal Omics Data via Joint Embedding Learning. In: 2023 15th International Conference on Knowledge and Systems Engineering (KSE). IEEE, pp. 1-6. ISBN 979-8-3503-2974-2, 979-8-3503-2975-9. Fulltext not available.

Monteagudo-Mesas, Pablo, Brönner, Cornelia, Kohvaei, Parastou, Amedi, Haris, Canzar, Stefan and Halic, Mario (2022) Ccr4–Not complex reduces transcription efficiency in heterochromatin. Nucleic Acids Research 50 (10), pp. 5565-5576. Fulltext not available.

Kaeuferle, Theresa, Stief, Tanja A., Canzar, Stefan, Kutlu, Nayad N., Willier, Semjon, Stenger, Dana, Ferrada‐Ernst, Paulina, Habjan, Nicola, Peters, Annika E., Busch, Dirk H. and Feuchtinger, Tobias (2022) Genome‐wide off‐target analyses of CRISPR/Cas9‐mediated T‐cell receptor engineering in primary human T cells. Clinical & Translational Immunology 11 (1). Fulltext not available.

Ringeling, Francisca Rojas, Chakraborty, Shounak, Vissers, Caroline, Reiman, Derek, Patel, Akshay M., Lee, Ki-Heon, Hong, Ari, Park, Chan-Woo, Reska, Tim, Gagneur, Julien, Chang, Hyeshik, Spletter, Maria L., Yoon, Ki-Jun, Ming, Guo-li, Song, Hongjun and Canzar, Stefan (2022) Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data. Nature Biotechnology 40 (5), pp. 741-750. Fulltext not available.

Jovanovic, Antonio, Alqassem, Israa, Chappell, Nathan, Canzar, Stefan and Matijevic, Domagoj (2022) Predicting RNA splicing branchpoints. In: 2022 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO). , pp. 383-388. ISBN 978-953-233-103-5, 978-1-6654-8434-3. Fulltext not available.

Ito-Kureha, Taku, Leoni, Cristina, Borland, Kayla, Cantini, Giulia, Bataclan, Marian, Metzger, Rebecca N., Ammann, Gregor, Krug, Anne B., Marsico, Annalisa, Kaiser, Stefanie, Canzar, Stefan, Feske, Stefan, Monticelli, Silvia, König, Julian and Heissmeyer, Vigo (2022) The function of Wtap in N6-adenosine methylation of mRNAs controls T cell receptor signaling and survival of T cells. Nature Immunology 23 (8), pp. 1208-1221. Fulltext not available.

Kim, Nam-Shik, Ringeling, Francisca Rojas, Zhou, Ying, Nguyen, Ha Nam, Temme, Stephanie J., Lin, Yu-Ting, Eacker, Stephen, Dawson, Valina L., Dawson, Ted M., Xiao, Bo, Hsu, Kuei-sen, Canzar, Stefan, Li, Weidong, Worley, Paul, Christian, Kimberly M., Yoon, Ki-Jun, Song, Hongjun and Ming, Guo-li (2021) CYFIP1 Dosages Exhibit Divergent Behavioral Impact via Diametric Regulation of NMDA Receptor Complex Translation in Mouse Models of Psychiatric Disorders. Biological Psychiatry 92 (10), pp. 815-826. Fulltext not available.

Do, Van Hoan and Canzar, Stefan (2021) A generalization of t-SNE and UMAP to single-cell multimodal omics. Genome Biology 22 (1). Fulltext not available.

Alqassem, Israa, Sonthalia, Yash, Klitzke-Feser, Erika, Shim, Heejung and Canzar, Stefan (2021) McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data. Bioinformatics 37 (14), pp. 2004-2011. Fulltext not available.

Do, Van Hoan, Rojas Ringeling, Francisca and Canzar, Stefan (2021) Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data. Genome Research 31 (4), pp. 677-688. Fulltext not available.

Lazareva, Olga, Canzar, Stefan, Yuan, Kevin, Baumbach, Jan, Blumenthal, David B., Tieri, Paolo, Kacprowski, Tim, List, Markus and Valencia, Alfonso (2020) BiCoN: network-constrained biclustering of patients and omics data. Bioinformatics 37 (16), pp. 2398-2404. Fulltext not available.

Do, Van Hoan, Elbassioni, Khaled and Canzar, Stefan (2020) Sphetcher: Spherical Thresholding Improves Sketching of Single-Cell Transcriptomic Heterogeneity. iScience 23 (6), p. 101126.

Bamopoulos, Stefanos A., Batcha, Aarif M. N., Jurinovic, Vindi, Rothenberg-Thurley, Maja, Janke, Hanna, Ksienzyk, Bianka, Philippou-Massier, Julia, Graf, Alexander, Krebs, Stefan, Blum, Helmut, Schneider, Stephanie, Konstandin, Nikola, Sauerland, Maria Cristina, Görlich, Dennis, Berdel, Wolfgang E., Woermann, Bernhard J., Bohlander, Stefan K., Canzar, Stefan, Mansmann, Ulrich, Hiddemann, Wolfgang, Braess, Jan, Spiekermann, Karsten, Metzeler, Klaus H. and Herold, Tobias (2020) Clinical presentation and differential splicing of SRSF2, U2AF1 and SF3B1 mutations in patients with acute myeloid leukemia. Leukemia 34 (10), pp. 2621-2634. Fulltext not available.

Chakraborty, Shounak, Canzar, Stefan, Marschall, Tobias and Schulz, Marcel H. (2020) Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. Journal of Computational Biology 27 (3), pp. 330-341. Fulltext not available.

Blaeschke, Franziska, Willier, Semjon, Stenger, Dana, Lepenies, Mareike, Horstmann, Martin A., Escherich, Gabriele, Zimmermann, Martin, Rojas Ringeling, Francisca, Canzar, Stefan, Kaeuferle, Theresa, Rohlfs, Meino, Binder, Vera, Klein, Christoph and Feuchtinger, Tobias (2020) Leukemia-induced dysfunctional TIM-3+CD4+ bone marrow T cells increase risk of relapse in pediatric B-precursor ALL patients. Leukemia 34 (10), pp. 2607-2620. Fulltext not available.

Canzar, Stefan and Rojas Ringeling, Francisca, eds. (2020) Protein-Protein Interaction Networks: Methods and Protocols. Methods in Molecular Biology, 2074. Humana New York, NY. ISBN 978-1-4939-9872-2, 978-1-4939-9875-3. Fulltext not available.

Weichmann, Franziska, Hett, Robert, Schepers, Aloys, Ito-Kureha, Taku, Flatley, Andrew, Slama, Kaouthar, Hastert, Florian D., Angstman, Nicholas B., Cardoso, M. Cristina, König, Julian, Hüttelmaier, Stefan, Dieterich, Christoph, Canzar, Stefan, Helm, Mark, Heissmeyer, Vigo, Feederle, Regina and Meister, Gunter (2020) Validation strategies for antibodies targeting modified ribonucleotides. RNA 26 (10), pp. 1489-1506. Fulltext not available.

Hoss, Florian, Mueller, James L., Rojas Ringeling, Francisca, Rodriguez-Alcazar, Juan F., Brinkschulte, Rebecca, Seifert, Gerald, Stahl, Rainer, Broderick, Lori, Putnam, Chris D., Kolodner, Richard D., Canzar, Stefan, Geyer, Matthias, Hoffman, Hal M. and Latz, Eicke (2019) Alternative splicing regulates stochastic NLRP3 activity. Nature Communications 10 (1). Fulltext not available.

Sulakhe, Dinanath, D’Souza, Mark, Wang, Sheng, Balasubramanian, Sandhya, Athri, Prashanth, Xie, Bingqing, Canzar, Stefan, Agam, Gady, Gilliam, T. Conrad and Maltsev, Natalia (2019) Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. Briefings in Bioinformatics 20 (5), pp. 1754-1768. Fulltext not available.

Berg, Daniel A., Su, Yijing, Jimenez-Cyrus, Dennisse, Patel, Aneek, Huang, Nancy, Morizet, David, Lee, Stephanie, Shah, Reeti, Ringeling, Francisca Rojas, Jain, Rajan, Epstein, Jonathan A., Wu, Qing-Feng, Canzar, Stefan, Ming, Guo-Li, Song, Hongjun and Bond, Allison M. (2019) A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis. Cell 177 (3), 654-668.e15. Fulltext not available.

Borozan, L., Matijevic, D. and Canzar, Stefan (2019) Properties of the generalized Robinson-Foulds metric. In: 2019 42nd International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO). IEEE, pp. 330-335. ISBN 978-953-233-098-4, 978-1-5386-9296-7. Fulltext not available.

Grabowski, Piotr, Hesse, Sebastian, Hollizeck, Sebastian, Rohlfs, Meino, Behrends, Uta, Sherkat, Roya, Tamary, Hannah, Ünal, Ekrem, Somech, Raz, Patıroğlu, Türkan, Canzar, Stefan, van der Werff Ten Bosch, Jutte, Klein, Christoph and Rappsilber, Juri (2019) Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition. Molecular & Cellular Proteomics 18 (4), pp. 760-772. Fulltext not available.

Gonzales, Natalia M., Seo, Jungkyun, Hernandez Cordero, Ana I., St. Pierre, Celine L., Gregory, Jennifer S., Distler, Margaret G., Abney, Mark, Canzar, Stefan, Lionikas, Arimantas and Palmer, Abraham A. (2018) Genome wide association analysis in a mouse advanced intercross line. Nature Communications 9 (1). Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled, Elmasry, Amr and Raman, Rajiv (2018) On the approximability of the maximum interval constrained coloring problem. Discrete Optimization 27, pp. 57-72. Fulltext not available.

Chakraborty, Shounak, Canzar, Stefan, Marschall, Tobias and Schulz, Marcel H. (2018) Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. In: Raphael, Benjamin J., (ed.) Research in Computational Molecular Biology: 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings. Lecture Notes in Computer Science, 10812. Springer, Cham, pp. 21-36. ISBN 978-3-319-89928-2, 978-3-319-89929-9. Fulltext not available.

Andreotti, Sandro and Canzar, Stefan (2018) Guided Reconstruction of Full-Length Isoforms from Short Reads by CIDANE. In: Wajapeyee, Narendra and Gupta, Romi, (eds.) Epitranscriptomics: Methods and Protocols. Methods in Molecular Biology, 1870. Humana, New York, pp. 199-208. ISBN 978-1-4939-8807-5, 978-1-4939-8808-2. Fulltext not available.

Kuang, Zheng and Canzar, Stefan (2018) Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter. In: Wang, Yejun and Sun, Ming-an, (eds.) Transcriptome Data Analysis: Methods and Protocols. Methods in Molecular Biology, 1751. Humana, New York, pp. 73-88. ISBN 978-1-4939-7709-3, 978-1-4939-9264-5. Fulltext not available.

Yoon, Ki-Jun, Ringeling, Francisca Rojas, Vissers, Caroline, Jacob, Fadi, Pokrass, Michael, Jimenez-Cyrus, Dennisse, Su, Yijing, Kim, Nam-Shik, Zhu, Yunhua, Zheng, Lily, Kim, Sunghan, Wang, Xinyuan, Doré, Louis C., Jin, Peng, Regot, Sergi, Zhuang, Xiaoxi, Canzar, Stefan, He, Chuan, Ming, Guo-li and Song, Hongjun (2017) Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation. Cell 171 (4), 877-889.e17. Fulltext not available.

Canzar, Stefan and Salzberg, Steven L. (2017) Short Read Mapping: An Algorithmic Tour. Proceedings of the IEEE 105 (3), pp. 436-458. Fulltext not available.

Canzar, Stefan, Neu, Karlynn E, Tang, Qingming, Wilson, Patrick C, Khan, Aly A and Hancock, John (2016) BASIC: BCR assembly from single cells. Bioinformatics 33 (3), pp. 425-427. Fulltext not available.

Hashemifar, Somaye, Ma, Jianzhu, Naveed, Hammad, Canzar, Stefan and Xu, Jinbo (2016) ModuleAlign: module-based global alignment of protein–protein interaction networks. Bioinformatics 32 (17), i658-i664. Fulltext not available.

Canzar, Stefan, Andreotti, Sandro, Weese, David, Reinert, Knut and Klau, Gunnar W. (2016) CIDANE: comprehensive isoform discovery and abundance estimation. Genome Biology 17 (1). Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled, Jones, Mitchell and Mestre, Julián (2016) Resolving Conflicting Predictions from Multimapping Reads. Journal of Computational Biology 23 (3), pp. 203-217. Fulltext not available.

Kuang, Zheng, Boeke, Jef D. and Canzar, Stefan (2016) The dynamic landscape of fission yeast meiosis alternative-splice isoforms. Genome Research 27 (1), pp. 145-156. Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled, Klau, Gunnar W. and Mestre, Julián (2015) On Tree-Constrained Matchings and Generalizations. Algorithmica 71 (1), pp. 98-119. Fulltext not available.

Magoc, Tanja, Pabinger, Stephan, Canzar, Stefan, Liu, Xinyue, Su, Qi, Puiu, Daniela, Tallon, Luke J. and Salzberg, Steven L. (2013) GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinformatics 29 (14), pp. 1718-1725. Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled and Mestre, Julián (2013) A Polynomial Delay Algorithm for Enumerating Approximate Solutions to the Interval Constrained Coloring Problem. In: Blelloch, Guy and Mellon, Carnegie, (eds.) 2010 Proceedings of the Twelfth Workshop on Algorithm Engineering and Experiments (ALENEX). Society for Industrial and Applied Mathematics, SIAM, Philadelphia, Pennsylvania, pp. 23-33. ISBN 978-0-898719-31-4, 978-1-61197-290-0. Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled and Mestre, Julián (2013) A polynomial-delay algorithm for enumerating approximate solutions to the interval constrained coloring problem. ACM Journal of Experimental Algorithmics 18, 2.1-2.19. Fulltext not available.

Canzar, Stefan, El-Kebir, Mohammed, Pool, René, Elbassioni, Khaled, Malde, Alpeshkumar K., Mark, Alan E., Geerke, Daan P., Stougie, Leen and Klau, Gunnar W. (2013) Charge Group Partitioning in Biomolecular Simulation. Journal of Computational Biology 20 (3), pp. 188-198. Fulltext not available.

Canzar, Stefan, Marschall, Tobias, Rahmann, Sven and Schwiegelshohn, Chris (2013) Solving the Minimum String Cover Problem. In: Bader, David A. and Mutzel, Petra, (eds.) 2012 Proceedings of the Fourteenth Workshop on Algorithm Engineering and Experiments (ALENEX). Society for Industrial and Applied Mathematics, SIAM, Philadelphia, Pennsylvania, pp. 75-83. ISBN 978-1-611972-12-2, 978-1-61197-292-4. Fulltext not available.

Andreotti, Sandro, Reinert, Knut and Canzar, Stefan (2013) The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees. Journal of Computational Biology 20 (9), pp. 643-659. Fulltext not available.

Böcker, Sebastian, Canzar, Stefan and Klau, Gunnar W. (2013) The Generalized Robinson-Foulds Metric. In: Darling, Aaron and Stoye, Jens, (eds.) Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings. Lecture Notes in Computer Science, 8126. Springer, Berlin, pp. 156-169. ISBN 978-3-642-40452-8, 978-3-642-40453-5. Fulltext not available.

Marschall, Tobias, Costa, Ivan G., Canzar, Stefan, Bauer, Markus, Klau, Gunnar W., Schliep, Alexander and Schönhuth, Alexander (2012) CLEVER: clique-enumerating variant finder. Bioinformatics 28 (22), pp. 2875-2882. Fulltext not available.

Canzar, Stefan, El-Kebir, Mohammed, Pool, René, Elbassioni, Khaled, Malde, Alpesh K., Mark, Alan E., Geerke, Daan P., Stougie, Leen and Klau, Gunnar W. (2012) Charge Group Partitioning in Biomolecular Simulation. In: Chor, Benny, (ed.) Research in Computational Molecular Biology: 16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings. Lecture Notes in Computer Science, 7262. Springer, Berlin, pp. 29-43. ISBN 978-3-642-29626-0, 978-3-642-29627-7. Fulltext not available.

Canzar, Stefan, Toussaint, Nora C. and Klau, Gunnar W. (2011) An exact algorithm for side-chain placement in protein design. Optimization Letters 5 (3), pp. 393-406. Fulltext not available.

Canzar, Stefan and El-Kebir, Mohammed (2011) A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding. In: Przytycka, Teresa M. and Sagot, Marie-France, (eds.) Algorithms in Bioinformatics: 11th International Workshop, WABI 2011, Saarbrücken, Germany, September 5-7, 2011, Proceedings. Lecture Notes in Computer Science, 6833. Springer, Berlin, pp. 26-38. ISBN 978-3-642-23037-0, 978-3-642-23038-7. Fulltext not available.

Althaus, Ernst, Canzar, Stefan, Elbassioni, Khaled, Karrenbauer, Andreas and Mestre, Julián (2011) Approximation Algorithms for the Interval Constrained Coloring Problem. Algorithmica 61 (2), pp. 342-361. Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled, Klau, Gunnar W. and Mestre, Julián (2011) On Tree-Constrained Matchings and Generalizations. In: Aceto, Luca and Henzinger, Monika and Sgall, Jiří, (eds.) Automata, Languages and Programming: 38th International Colloquium, ICALP 2011, Zurich, Switzerland, July 4-8, 2011. Proceedings, Part I. Lecture Notes in Computer Science, 6755. Springer, Berlin, pp. 98-109. ISBN 978-3-642-22005-0, 978-3-642-22006-7. Fulltext not available.

Althaus, Ernst, Canzar, Stefan, Ehrler, Carsten, Emmett, Mark R., Karrenbauer, Andreas, Marshall, Alan G., Meyer-Bäse, Anke, Tipton, Jeremiah D. and Zhang, Hui-Min (2010) Computing H/D-Exchange rates of single residues from data of proteolytic fragments. BMC Bioinformatics 11 (1). Fulltext not available.

Canzar, Stefan, Elbassioni, Khaled, Elmasry, Amr and Raman, Rajiv (2010) On the Approximability of the Maximum Interval Constrained Coloring Problem. In: Cheong, Otfried and Chwa, Kyung-Yong and Park, Kunsoo, (eds.) Algorithms and Computation: 21st International Symposium, ISAAC 2010, Jeju Island, Korea, December 15-17, 2010, Proceedings, Part II. Lecture Notes in Computer Science, 6507. Springer, Berlin, pp. 168-179. ISBN 978-3-642-17513-8, 978-3-642-17514-5. Fulltext not available.

Althaus, Ernst and Canzar, Stefan (2008) A Lagrangian relaxation approach for the multiple sequence alignment problem. Journal of Combinatorial Optimization 16 (2), pp. 127-154. Fulltext not available.

Althaus, Ernst, Canzar, Stefan, Elbassioni, Khaled, Karrenbauer, Andreas and Mestre, Julián (2008) Approximating the Interval Constrained Coloring Problem. In: Gudmundsson, Joachim, (ed.) Algorithm Theory – SWAT 2008. Lecture Notes in Computer Science, 5124. Springer, Berlin, pp. 210-221. ISBN 978-3-540-69900-2, 978-3-540-69903-3. Fulltext not available.

Althaus, Ernst, Canzar, Stefan, Emmett, Mark R., Karrenbauer, Andreas, Marshall, Alan G., Meyer-Baese, Anke and Zhang, Huimin (2008) Computing H/D-exchange speeds of single residues from data of peptic fragments. In: Wainwright, Roger L. and Haddad, Hisham M., (eds.) SAC '08: Proceedings of the 2008 ACM symposium on Applied computing. Association for Computing Machinery, New York, pp. 1273-1277. ISBN 978-1-59593-753-7. Fulltext not available.

Althaus, Ernst and Canzar, Stefan (2008) LASA: A Tool for Non-heuristic Alignment of Multiple Sequences. In: Elloumi, Mourad and Küng, Josef and Linial, Michal and Murphy, Robert F. and Schneider, Kristan and Toma, Cristian, (eds.) Bioinformatics Research and Development (BIRD 2008). Communications in Computer and Information Science, 13. Springer, Berlin, pp. 489-498. ISBN 978-3-540-70598-7, 978-3-540-70600-7. Fulltext not available.

Althaus, Ernst and Canzar, Stefan (2007) A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem. In: Dress, Andreas and Xu, Yinfeng and Zhu, Binhai, (eds.) Combinatorial Optimization and Applications (COCOA 2007). Lecture Notes in Computer Science, 4616. Springer, Berlin, pp. 267-278. ISBN 978-3-540-73555-7, 978-3-540-73556-4. Fulltext not available.