Bibliography of the Universität Regensburg

Borozan, Bartol, Prusina, Tomislav, Borozan, Luka, Ševerdija, Domagoj, Rojas Ringeling, Francisca, Matijević, Domagoj and Canzar, Stefan (2025) Optimal marker genes for c-separated cell types with SepSolve. Genome Research 35 (12), pp. 2770-2780.

Yoo, DongAhn, Rhie, Arang, Hebbar, Prajna, Antonacci, Francesca, Logsdon, Glennis A., Solar, Steven J., Antipov, Dmitry, Pickett, Brandon D., Safonova, Yana, Montinaro, Francesco, Luo, Yanting, Malukiewicz, Joanna, Storer, Jessica M., Lin, Jiadong, Sequeira, Abigail N., Mangan, Riley J., Hickey, Glenn, Monfort Anez, Graciela, Balachandran, Parithi, Bankevich, Anton, Beck, Christine R., Biddanda, Arjun, Borchers, Matthew, Bouffard, Gerard G., Brannan, Emry, Brooks, Shelise Y., Carbone, Lucia, Carrel, Laura, Chan, Agnes P., Crawford, Juyun, Diekhans, Mark, Engelbrecht, Eric, Feschotte, Cedric, Formenti, Giulio, Garcia, Gage H., de Gennaro, Luciana, Gilbert, David, Green, Richard E., Guarracino, Andrea, Gupta, Ishaan, Haddad, Diana, Han, Junmin, Harris, Robert S., Hartley, Gabrielle A., Harvey, William T., Hiller, Michael, Hoekzema, Kendra, Houck, Marlys L., Jeong, Hyeonsoo, Kamali, Kaivan, Kellis, Manolis, Kille, Bryce, Lee, Chul, Lee, Youngho, Lees, William, Lewis, Alexandra P., Li, Qiuhui, Loftus, Mark, Loh, Yong Hwee Eddie, Loucks, Hailey, Ma, Jian, Mao, Yafei, Martinez, Juan F. I., Masterson, Patrick, McCoy, Rajiv C., McGrath, Barbara, McKinney, Sean, Meyer, Britta S., Miga, Karen H., Mohanty, Saswat K., Munson, Katherine M., Pal, Karol, Pennell, Matt, Pevzner, Pavel A., Porubsky, David, Potapova, Tamara, Ringeling, Francisca R., Rocha, Joana L., Ryder, Oliver A., Sacco, Samuel, Saha, Swati, Sasaki, Takayo, Schatz, Michael C., Schork, Nicholas J., Shanks, Cole, Smeds, Linnéa, Son, Dongmin R., Steiner, Cynthia, Sweeten, Alexander P., Tassia, Michael G., Thibaud-Nissen, Françoise, Torres-González, Edmundo, Trivedi, Mihir, Wei, Wenjie, Wertz, Julie, Yang, Muyu, Zhang, Panpan, Zhang, Shilong, Zhang, Yang, Zhang, Zhenmiao, Zhao, Sarah A., Zhu, Yixin, Jarvis, Erich D., Gerton, Jennifer L., Rivas-González, Iker, Paten, Benedict, Szpiech, Zachary A., Huber, Christian D., Lenz, Tobias L., Konkel, Miriam K., Yi, Soojin V., Canzar, Stefan, Watson, Corey T., Sudmant, Peter H., Molloy, Erin, Garrison, Erik, Lowe, Craig B., Ventura, Mario, O’Neill, Rachel J., Koren, Sergey, Makova, Kateryna D., Phillippy, Adam M. and Eichler, Evan E. (2025) Complete sequencing of ape genomes. Nature 641 (8062), pp. 401-418. Fulltext not available.

Canzar, Stefan, Do, Van Hoan, Jelić, Slobodan, Laue, Sören, Matijević, Domagoj and Prusina, Tomislav (2024) Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms for Molecular Biology 19 (1).

Iyer, Dhanur P., Moyon, Lambert, Wittler, Lars, Cheng, Chieh-Yu, Ringeling, Francisca R., Canzar, Stefan, Marsico, Annalisa and Bulut-Karslioğlu, Aydan (2024) Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), pp. 572-589. Fulltext not available.

Blažević, Mislav, Canzar, Stefan, Elbassioni, Khaled and Matijević, Domagoj (2024) Anti Tai mapping for unordered labeled trees. Information Processing Letters 185, p. 106454. Fulltext not available.

Sun, Jianfeng, Philpott, Martin, Loi, Danson, Li, Shuang, Monteagudo-Mesas, Pablo, Hoffman, Gabriela, Robson, Jonathan, Mehta, Neelam, Gamble, Vicki, Brown, Tom, Brown, Tom, Canzar, Stefan, Oppermann, Udo and Cribbs, Adam P. (2024) Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules. Nature Methods 21 (3), pp. 401-405. Fulltext not available.

Borozan, Luka, Rojas Ringeling, Francisca, Kao, Shao-Yen, Nikonova, Elena, Monteagudo-Mesas, Pablo, Matijević, Domagoj, Spletter, Maria L, Canzar, Stefan and Ponty, Yann (2023) Counting pseudoalignments to novel splicing events. Bioinformatics 39 (7). Fulltext not available.

Rojas Ringeling, Francisca and Canzar, Stefan (2023) Algorithmen zum Entschlüsseln der Genregulation. Blick in die Wissenschaft : Forschungsmagazin der Universität Regensburg 31 (44/45), pp. 46-48. Fulltext not available.

Kim, Nam-Shik, Ringeling, Francisca Rojas, Zhou, Ying, Nguyen, Ha Nam, Temme, Stephanie J., Lin, Yu-Ting, Eacker, Stephen, Dawson, Valina L., Dawson, Ted M., Xiao, Bo, Hsu, Kuei-sen, Canzar, Stefan, Li, Weidong, Worley, Paul, Christian, Kimberly M., Yoon, Ki-Jun, Song, Hongjun and Ming, Guo-li (2021) CYFIP1 Dosages Exhibit Divergent Behavioral Impact via Diametric Regulation of NMDA Receptor Complex Translation in Mouse Models of Psychiatric Disorders. Biological Psychiatry 92 (10), pp. 815-826. Fulltext not available.