Bibliographie der Universität Regensburg

Do, Van Hoan, Lan Tran, Thi Phuong und Canzar, Stefan (2026) GraphBG: Fast Bayesian Domain Detection via Spectral Graph Convolutions for Multi-slice and Multi-modal Spatial Transcriptomics. bioRxiv. Volltext nicht vorhanden.

Li, Danrong, Ko, Young Kun und Canzar, Stefan (2025) CAMP: Coreset Accelerated Metacell Partitioning enables scalable analysis of single-cell data. bioRxiv. Volltext nicht vorhanden.

Borozan, Bartol, Prusina, Tomislav, Borozan, Luka, Ševerdija, Domagoj, Rojas Ringeling, Francisca, Matijević, Domagoj und Canzar, Stefan (2025) Optimal marker genes for c-separated cell types with SepSolve. Genome Research 35 (12), S. 2770-2780.

Yoo, DongAhn, Rhie, Arang, Hebbar, Prajna, Antonacci, Francesca, Logsdon, Glennis A., Solar, Steven J., Antipov, Dmitry, Pickett, Brandon D., Safonova, Yana, Montinaro, Francesco, Luo, Yanting, Malukiewicz, Joanna, Storer, Jessica M., Lin, Jiadong, Sequeira, Abigail N., Mangan, Riley J., Hickey, Glenn, Monfort Anez, Graciela, Balachandran, Parithi, Bankevich, Anton, Beck, Christine R., Biddanda, Arjun, Borchers, Matthew, Bouffard, Gerard G., Brannan, Emry, Brooks, Shelise Y., Carbone, Lucia, Carrel, Laura, Chan, Agnes P., Crawford, Juyun, Diekhans, Mark, Engelbrecht, Eric, Feschotte, Cedric, Formenti, Giulio, Garcia, Gage H., de Gennaro, Luciana, Gilbert, David, Green, Richard E., Guarracino, Andrea, Gupta, Ishaan, Haddad, Diana, Han, Junmin, Harris, Robert S., Hartley, Gabrielle A., Harvey, William T., Hiller, Michael, Hoekzema, Kendra, Houck, Marlys L., Jeong, Hyeonsoo, Kamali, Kaivan, Kellis, Manolis, Kille, Bryce, Lee, Chul, Lee, Youngho, Lees, William, Lewis, Alexandra P., Li, Qiuhui, Loftus, Mark, Loh, Yong Hwee Eddie, Loucks, Hailey, Ma, Jian, Mao, Yafei, Martinez, Juan F. I., Masterson, Patrick, McCoy, Rajiv C., McGrath, Barbara, McKinney, Sean, Meyer, Britta S., Miga, Karen H., Mohanty, Saswat K., Munson, Katherine M., Pal, Karol, Pennell, Matt, Pevzner, Pavel A., Porubsky, David, Potapova, Tamara, Ringeling, Francisca R., Rocha, Joana L., Ryder, Oliver A., Sacco, Samuel, Saha, Swati, Sasaki, Takayo, Schatz, Michael C., Schork, Nicholas J., Shanks, Cole, Smeds, Linnéa, Son, Dongmin R., Steiner, Cynthia, Sweeten, Alexander P., Tassia, Michael G., Thibaud-Nissen, Françoise, Torres-González, Edmundo, Trivedi, Mihir, Wei, Wenjie, Wertz, Julie, Yang, Muyu, Zhang, Panpan, Zhang, Shilong, Zhang, Yang, Zhang, Zhenmiao, Zhao, Sarah A., Zhu, Yixin, Jarvis, Erich D., Gerton, Jennifer L., Rivas-González, Iker, Paten, Benedict, Szpiech, Zachary A., Huber, Christian D., Lenz, Tobias L., Konkel, Miriam K., Yi, Soojin V., Canzar, Stefan, Watson, Corey T., Sudmant, Peter H., Molloy, Erin, Garrison, Erik, Lowe, Craig B., Ventura, Mario, O’Neill, Rachel J., Koren, Sergey, Makova, Kateryna D., Phillippy, Adam M. und Eichler, Evan E. (2025) Complete sequencing of ape genomes. Nature 641 (8062), S. 401-418. Volltext nicht vorhanden.

Canzar, Stefan, Do, Van Hoan, Jelić, Slobodan, Laue, Sören, Matijević, Domagoj und Prusina, Tomislav (2024) Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms for Molecular Biology 19 (1).

Iyer, Dhanur P., Moyon, Lambert, Wittler, Lars, Cheng, Chieh-Yu, Ringeling, Francisca R., Canzar, Stefan, Marsico, Annalisa und Bulut-Karslioğlu, Aydan (2024) Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), S. 572-589. Volltext nicht vorhanden.

Blažević, Mislav, Canzar, Stefan, Elbassioni, Khaled und Matijević, Domagoj (2024) Anti Tai mapping for unordered labeled trees. Information Processing Letters 185, S. 106454. Volltext nicht vorhanden.

Sun, Jianfeng, Philpott, Martin, Loi, Danson, Li, Shuang, Monteagudo-Mesas, Pablo, Hoffman, Gabriela, Robson, Jonathan, Mehta, Neelam, Gamble, Vicki, Brown, Tom, Brown, Tom, Canzar, Stefan, Oppermann, Udo und Cribbs, Adam P. (2024) Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules. Nature Methods 21 (3), S. 401-405. Volltext nicht vorhanden.

Borozan, Luka, Rojas Ringeling, Francisca, Kao, Shao-Yen, Nikonova, Elena, Monteagudo-Mesas, Pablo, Matijević, Domagoj, Spletter, Maria L, Canzar, Stefan und Ponty, Yann (2023) Counting pseudoalignments to novel splicing events. Bioinformatics 39 (7). Volltext nicht vorhanden.

Rojas Ringeling, Francisca und Canzar, Stefan (2023) Algorithmen zum Entschlüsseln der Genregulation. Blick in die Wissenschaft : Forschungsmagazin der Universität Regensburg 31 (44/45), S. 46-48. Volltext nicht vorhanden.

Kim, Nam-Shik, Ringeling, Francisca Rojas, Zhou, Ying, Nguyen, Ha Nam, Temme, Stephanie J., Lin, Yu-Ting, Eacker, Stephen, Dawson, Valina L., Dawson, Ted M., Xiao, Bo, Hsu, Kuei-sen, Canzar, Stefan, Li, Weidong, Worley, Paul, Christian, Kimberly M., Yoon, Ki-Jun, Song, Hongjun und Ming, Guo-li (2021) CYFIP1 Dosages Exhibit Divergent Behavioral Impact via Diametric Regulation of NMDA Receptor Complex Translation in Mouse Models of Psychiatric Disorders. Biological Psychiatry 92 (10), S. 815-826. Volltext nicht vorhanden.

Do, Van Hoan, Elbassioni, Khaled und Canzar, Stefan (2020) Sphetcher: Spherical Thresholding Improves Sketching of Single-Cell Transcriptomic Heterogeneity. iScience 23 (6), S. 101126.

Bamopoulos, Stefanos A., Batcha, Aarif M. N., Jurinovic, Vindi, Rothenberg-Thurley, Maja, Janke, Hanna, Ksienzyk, Bianka, Philippou-Massier, Julia, Graf, Alexander, Krebs, Stefan, Blum, Helmut, Schneider, Stephanie, Konstandin, Nikola, Sauerland, Maria Cristina, Görlich, Dennis, Berdel, Wolfgang E., Woermann, Bernhard J., Bohlander, Stefan K., Canzar, Stefan, Mansmann, Ulrich, Hiddemann, Wolfgang, Braess, Jan, Spiekermann, Karsten, Metzeler, Klaus H. und Herold, Tobias (2020) Clinical presentation and differential splicing of SRSF2, U2AF1 and SF3B1 mutations in patients with acute myeloid leukemia. Leukemia 34 (10), S. 2621-2634. Volltext nicht vorhanden.

Canzar, Stefan, Neu, Karlynn E, Tang, Qingming, Wilson, Patrick C, Khan, Aly A und Hancock, John (2016) BASIC: BCR assembly from single cells. Bioinformatics 33 (3), S. 425-427. Volltext nicht vorhanden.

Marschall, Tobias, Costa, Ivan G., Canzar, Stefan, Bauer, Markus, Klau, Gunnar W., Schliep, Alexander und Schönhuth, Alexander (2012) CLEVER: clique-enumerating variant finder. Bioinformatics 28 (22), S. 2875-2882. Volltext nicht vorhanden.

Canzar, Stefan, Toussaint, Nora C. und Klau, Gunnar W. (2011) An exact algorithm for side-chain placement in protein design. Optimization Letters 5 (3), S. 393-406. Volltext nicht vorhanden.

Althaus, Ernst und Canzar, Stefan (2008) A Lagrangian relaxation approach for the multiple sequence alignment problem. Journal of Combinatorial Optimization 16 (2), S. 127-154. Volltext nicht vorhanden.

Althaus, Ernst, Canzar, Stefan, Elbassioni, Khaled, Karrenbauer, Andreas und Mestre, Julián (2008) Approximating the Interval Constrained Coloring Problem. In: Gudmundsson, Joachim, (ed.) Algorithm Theory – SWAT 2008. Lecture Notes in Computer Science, 5124. Springer, Berlin, S. 210-221. ISBN 978-3-540-69900-2, 978-3-540-69903-3. Volltext nicht vorhanden.

Althaus, Ernst und Canzar, Stefan (2008) LASA: A Tool for Non-heuristic Alignment of Multiple Sequences. In: Elloumi, Mourad und Küng, Josef und Linial, Michal und Murphy, Robert F. und Schneider, Kristan und Toma, Cristian, (eds.) Bioinformatics Research and Development. Communications in Computer and Information Science, 13. Springer, Berlin, S. 489-498. ISBN 978-3-540-70598-7, 978-3-540-70600-7. Volltext nicht vorhanden.

Althaus, Ernst und Canzar, Stefan (2007) A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem. In: Dress, Andreas und Xu, Yinfeng und Zhu, Binhai, (eds.) Combinatorial Optimization and Applications. Lecture Notes in Computer Science, 4616. Springer, Berlin, S. 267-278. ISBN 978-3-540-73555-7, 978-3-540-73556-4. Volltext nicht vorhanden.