Veröffentlichungswege

BMC Bioinformatics

Evers, Maurits , Huttner, Michael, Dueck, Anne, Meister, Gunter und Engelmann, Julia C. (2015) miRA: adaptable novel miRNA identification in plants using small RNA sequencing data. BMC Bioinformatics 16 (370), S. 1-10.

BMC Genomics

Dueck, A., Evers, M., Henz, S. R., Unger, K., Eichner, N., Merkl, Rainer , Berezikov, E. , Engelmann, Julia C., Weigel, D. , Wenzl, S. und Meister, Gunter (2016) Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. BMC Genomics 17 (1), S. 853.

Bioinformatics

Hu, Yanren Linda, Pfahler, Simon, Lösch, Andreas, Vocht, Stefan, Hansch, Stefan , Rupp, Kevin, Beerenwinkel, Niko, Wettig, Tilo, Schill, Rudolf , Spang, Rainer und Mathelier, Anthony (2026) Quantifying Uncertainty of Predictions from Cancer Progression Models. Bioinformatics.

Nozari, Zahra , Hüttl, Paul , Simeth, Jakob , Schön, Marian, Hutchinson, James A. , Spang, Rainer und Nikolski, Macha (2025) Harp: Data Harmonization for Computational Tissue Deconvolution across Diverse Transcriptomics Platforms. Bioinformatics.

Simeth, Jakob , Hüttl, Paul , Schön, Marian, Nozari, Zahra, Huttner, Michael , Schmidt, Tobias, Altenbuchinger, Michael und Spang, Rainer (2024) Virtual Tissue Expression Analysis. Bioinformatics, btae709.

Rupp, Kevin, Lösch, Andreas, Hu, Y. Linda , Nie, Chenxi, Schill, Rudolf , Klever, Maren, Pfahler, Simon, Grasedyck, Lars, Wettig, Tilo, Beerenwinkel, Niko und Spang, Rainer (2024) Modeling metastatic progression from cross-sectional cancer genomics data. Bioinformatics 40 (suppl1), i140-i150.

Buck, Lena, Schmidt, Tobias, Feist, Maren, Schwarzfischer, Philipp, Kube, Dieter, Oefner, Peter J. , Zacharias, Helena U., Altenbuchinger, Michael , Dettmer, Katja , Gronwald, Wolfram und Spang, Rainer (2023) Anomaly detection in mixed high dimensional molecular data. Bioinformatics 39 (8), btad501.

Cell Rep (Cell Reports)

Loedige, Inga, Jakob, Leonhard, Treiber, Thomas, Ray, Debashish, Stotz, Mathias, Treiber, Nora, Hennig, Janosch, Cook, Kate B. , Morris, Quaid, Hughes, Timothy R., Engelmann, Julia C. , Krahn, Michael P. und Meister, Gunter (2015) The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation. Cell Rep (Cell Reports) 13 (6), S. 1206-1220.

Frontiers in Immunology

Schilling, Hannah-Lou, Glehr, Gunther , Kapinsky, Michael, Ahrens, Norbert , Riquelme, Paloma , Cordero, Laura, Bitterer, Florian, Schlitt, Hans J. , Geissler, Edward K. , Haferkamp, Sebastian, Hutchinson, James A. und Kronenberg, Katharina (2021) Development of a Flow Cytometry Assay to Predict Immune Checkpoint Blockade-Related Complications. Frontiers in Immunology 2021 (12), S. 1-12. Zugang zum Volltext eingeschränkt.

Metabolites

Schmidt, Tobias, Sombke, Maximilian, Zacharias, Helena U., Oefner, Peter J. , Spang, Rainer und Gronwald, Wolfram (2026) Metabodeconplus—An R Package for Automated Deconvolution and Alignment of 1D NMR Metabolomics Data. Metabolites 16 (9), S. 604.

Nature Communications

Riquelme, Paloma , Haarer, Jan, Kammler, Anja, Walter, Lisa , Tomiuk, Stefan, Ahrens, Norbert , Wege, Anja K. , Goecze, Ivan, Zecher, Daniel, Banas, Bernhard , Spang, Rainer , Fändrich, Fred, Lutz, Manfred B., Sawitzki, Birgit, Schlitt, Hans J. , Ochando, Jordi , Geissler, Edward K. und Hutchinson, James A. (2018) TIGIT+ iTregs elicited by human regulatory macrophages control T cell immunity. Nature Communications 9 (2858), S. 1-18.

Nucleic Acids Research

Hannus, Michael, Beitzinger, Michaela, Engelmann, Julia C. , Weickert, Marie-Theresa, Spang, Rainer, Hannus, Stefan und Meister, Gunter (2014) siPools: highly complex but accurately defined siRNA pools eliminate off-target effects. Nucleic Acids Research 42, S. 8049-8061.

PLoS Computational Biology

Engelmann, Julia C. , Amann, Thomas, Ott-Rötzer, Brigitta, Nützel, Margit, Reinders, Yvonne, Reinders, Jörg, Thasler, Wolfgang E., Kristl, Theresa, Teufel, Andreas, Huber, Christian G. , Oefner, Peter J. , Spang, Rainer und Hellerbrand, Claus (2015) Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma. PLoS Computational Biology 11 (5), S. 1-22.

PLoS ONE

Moeckel, Sylvia, Vollmann-Zwerenz, Arabel, Proescholdt, Martin A., Brawanski, Alexander, Riemenschneider, Markus J., Bogdahn, Ulrich, Bosserhoff, A. K. , Spang, Rainer und Hau, Peter (2016) Validation Study: Response-Predictive Gene Expression Profiling of Glioma Progenitor Cells In Vitro. PLoS ONE 11 (3), e0151312.

Hau, Peter, Moeckel, Sylvia, Meyer, Katharina, Leukel, Petra, Heudorfer, Fabian, Seliger, Corinna, Stangl, Christina, Bogdahn, Ulrich, Proescholdt, Martin A., Brawanski, Alexander, Vollmann-Zwerenz, Arabel, Riemenschneider, Markus J., Bosserhoff, Anja-Katrin und Spang, Rainer (2014) Response-Predictive Gene Expression Profiling of Glioma Progenitor Cells In Vitro. PLoS ONE 9 (9), e108632.

Schmid, Rainer, Meyer, Katharina, Spang, Rainer, Schittek, Birgit und Bosserhoff, Anja-Katrin (2013) YBX1 is a modulator of MIA/CD-RAP-dependent chondrogenesis. PLoS ONE 8 (12).

PLoS One

Moffa, Giusi, Erdmann, Gerrit, Voloshanenko, Oksana, Hundsrucker, Christian, Sadeh, Mohammad Javad, Boutros, Michael und Spang, Rainer (2016) Refining Pathways: A Model Comparison Approach. PLoS One 11 (6), e0155999.

PloS one

Seliger, Corinna, Leukel, Petra, Moeckel, Sylvia, Jachnik, Birgit, Lottaz, Claudio, Kreutz, Marina, Brawanski, Alexander, Proescholdt, Martin, Bogdahn, Ulrich, Bosserhoff, Anja-Katrin , Vollmann-Zwerenz, Arabel und Hau, Peter (2013) Lactate-Modulated Induction of THBS-1 Activates Transforming Growth Factor (TGF)-beta2 and Migration of Glioma Cells In Vitro. PloS one 8 (11), e78935.

Scientific Reports

Reinders, Jörg, Altenbuchinger, Michael, Limm, Katharina , Schwarzfischer, Philipp, Scheidt, Tamara, Strasser, Lisa, Richter, Julia, Szczepanowski, Monika, Huber, Christian G. , Klapper, Wolfram, Spang, Rainer und Oefner, Peter J. (2020) Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue. Scientific Reports 10 (7876), S. 1-11.

Altenbuchinger, Michael, Zacharias, Helena, Solbrig, S., Schaefer, Andreas, Buyukozkan, M., Schultheiss, U. T. , Kotsis, F., Köttgen, Anna, Spang, Rainer, Oefner, Peter J., Krumsiek, J. und Gronwald, Wolfram (2019) A multi-source data integration approach reveals novel associations between metabolites and renal outcomes in the German Chronic Kidney Disease study. Scientific Reports 9 (1), S. 13954.

Heinrich, Paul, Kohler, Christian , Ellmann, Lisa, Kuerner, Paul, Spang, Rainer, Oefner, Peter J. und Dettmer, Katja (2018) Correcting for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution-multiple-tracer-data from stable isotope labeling experiments with IsoCorrectoR. Scientific Reports 8 (17910), S. 1-10.