Bibliography of the Universität Regensburg

Antosz, Wojciech, Pfab, Alexander, Ehrnsberger, Hans F., Holzinger, Philipp, Köllen, Karin, Mortensen, Simon A. , Bruckmann, Astrid, Schubert, Thomas , Längst, Gernot, Griesenbeck, Joachim , Schubert, Veit , Grasser, Marion and Grasser, Klaus D. (2017) The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors. The Plant Cell 29 (4), pp. 854-870. Fulltext not available.

Babl, Virginia-Lorena, Girke, Philipp, Kruse, Sebastian, Pinz, Sophia Charlotte , Hannig, Katharina, Schächner, Christopher, Hergert, Kristin, Wittner, Manuel, Seufert, Wolfgang , Milkereit, Philipp , Tschochner, Herbert and Griesenbeck, Joachim (2024) Establishment of closed 35S ribosomal RNA gene chromatin in stationary Saccharomyces cerevisiae cells. Nucleic Acids Research.

Babl, Virginia-Lorena (2017) Comprehensive analysis of transitions in ribosomal DNA chromatin states in S. cerevisiae during different growth phases. PhD, Universität Regensburg.

Boeger, Hinrich, Griesenbeck, Joachim and Kornberg, Roger D. (2008) Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription. Cell 133 (4), pp. 716-726. Fulltext not available.

Charton, Romain, Muguet, Alexia, Griesenbeck, Joachim, Smerdon, Michael J. and Conconi, Antonio (2019) In yeast cells arrested at the early S-phase by hydroxyurea, rRNA gene promoters and chromatin are poised for transcription while rRNA synthesis is compromised. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 815, pp. 20-29. Fulltext not available.

Daiß, Julia L. , Griesenbeck, Joachim , Tschochner, Herbert and Engel, Christoph (2023) Synthesis of the ribosomal RNA precursor in human cells: mechanisms, factors and regulation. Biological Chemistry 404 (11-12), pp. 1003-1023. Fulltext not available.

Goetze, Hannah, Wittner, Manuel, Hamperl, Stephan , Hondele, Maria , Merz, Katharina, Stoeckl, Ulrike and Griesenbeck, Joachim (2010) Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II. Molecular and Cellular Biology 30 (8), pp. 2028-2045. Fulltext not available.

Hannig, Katharina, Babl, Virginia, Hergert, Kristin, Maier, Andreas, Pilsl, Michael, Schächner, Christopher, Stöckl, Ulrike, Milkereit, Philipp, Tschochner, Herbert, Seufert, Wolfgang and Griesenbeck, Joachim (2019) The C-terminal region of Net1 is an activator of RNA polymerase I transcription with conserved features from yeast to human. PLOS Genetics 15 (2), e1008006.

Hermans, Nicolaas, Huisman, Juriën Jori, Brouwer, Thomas Bauke, Schächner, Christopher, van Heusden, G. Paul H., Griesenbeck, Joachim and van Noort, John (2017) Toehold-enhanced LNA probes for selective pull down and single-molecule analysis of native chromatin. Scientific Reports 7 (1). Fulltext not available.

Hamperl, Stephan , Brown, Christopher R., Villar Garea, Ana, Perez-Fernandez, Jorge , Bruckmann, Astrid, Huber, Katharina, Wittner, Manuel, Babl, Virginia, Stoeckl, Ulrike, Deutzmann, Rainer, Boeger, Hinrich, Tschochner, Herbert, Milkereit, Philipp and Griesenbeck, Joachim (2013) Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae. Nucleic Acids Research 2013, pp. 1-20.

Jakob, Steffen, Ohmayer, Uli, Neueder, Andreas , Hierlmeier, Thomas, Perez-Fernandez, Jorge , Hochmuth, Eduard, Deutzmann, Rainer, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2012) Interrelationships between Yeast Ribosomal Protein Assembly Events and Transient Ribosome Biogenesis Factors Interactions in Early Pre-Ribosomes. PloS one 7 (3), e32552.

Linnemann, Jan, Pöll, Gisela, Jakob, Steffen, Ferreira-Cerca, Sébastien , Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2019) Impact of two neighbouring ribosomal protein clusters on biogenesis factor binding and assembly of yeast late small ribosomal subunit precursors. PLOS ONE 14 (1), e0203415.

Merkl, Philipp E., Pilsl, Michael, Fremter, Tobias, Schwank, Katrin, Engel, Christoph , Längst, Gernot, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2020) RNA polymerase I (Pol I) passage through nucleosomes depends on Pol I subunits binding its lobe structure. Journal of Biological Chemistry 295 (15), pp. 4782-4795. Fulltext not available.

Milkereit, Philipp, Pöll, Gisela, Müller, Christian, Bodden, Malena, Teubl, Fabian, Eichner, Norbert, Lehmann, Gerhard , Griesenbeck, Joachim and Tschochner, Herbert (2017) Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae. PLOS ONE 12 (7), e0179405.

Milkereit, Philipp, Griesenbeck, Joachim, Tschochner, Herbert , Ohmayer, Uli, Gil-Hernández, Álvaro, Sauert, Martina, Martín-Marcos, Pilar and Tamame, Mercedes (2015) Studies on the Coordination of Ribosomal Protein Assembly Events Involved in Prosessing and Stabiliz. PLoS ONE 10 (12), e0143768.

Mao, Changhui, Brown, Christopher R., Griesenbeck, Joachim and Boeger, Hinrich (2011) Occlusion of regulatory sequences by promoter nucleosomes in vivo. PloS one 6 (3), e17521.

Merz, Katharina, Hondele, Maria , Goetze, Hannah, Gmelch, Katharina, Stoeckl, Ulrike and Griesenbeck, Joachim (2008) Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules. Genes & Development 22 (9), pp. 1190-1204. Fulltext not available.

Oberprieler, Christoph , Talianova, Martina and Griesenbeck, Joachim (2019) Effects of polyploidy on the coordination of gene expression between organellar and nuclear genomes in Leucanthemum Mill. (Compositae, Anthemideae). Ecology and Evolution 9 (16), pp. 9100-9110.

Ohmayer, Uli, Gamalinda, Michael, Sauert, Martina , Ossowski, Julius, Pöll, Gisela, Linnemann, Jan, Hierlmeier, Thomas, Perez-Fernandez, Jorge , Kumcuoglu, Beril, Leger-Silvestre, Isabelle, Faubladier, Marlène, Griesenbeck, Joachim , Woolford, John , Tschochner, Herbert and Milkereit, Philipp (2013) Studies on the Assembly Characteristics of Large Subunit Ribosomal Proteins in S. cerevisae. PloS one 8 (7), e68412.

Ohmayer, Uli, Perez-Fernandez, Jorge, Hierlmeier, Thomas, Pöll, Gisela, Williams, Lydia, Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2012) Local Tertiary Structure Probing of Ribonucleoprotein Particles by Nuclease Fusion Proteins. Plos One 7, e42449.

Pöll, Gisela, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2023) Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. PLOS ONE 18 (3), e0283698.

Pilsl, Michael, Tschochner, Herbert, Griesenbeck, Joachim and Engel, Christoph (2022) RNA-Polymerase I: einer spezialisierten Transkriptionsmaschine auf der Spur. BIOspektrum 28 (5), pp. 484-487.

Preiss, Thomas, Pöll, Gisela, Pilsl, Michael, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2021) Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. PLOS ONE 16 (11), e0252497.

Philippi, Anja, Steinbauer, Robert, Reiter, Alarich, Fath, Stephan, Leger-Silvestre, Isabelle, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2010) TOR-dependent reduction in the expression level of Rrn3p lowers the activity of the yeast RNA Pol I machinery, but does not account for the strong inhibition of rRNA production. Nucleic Acids Research 38 (16), pp. 5315-5326. Fulltext not available.

Reiter, Alarich, Hamperl, Stephan , Seitz, Hannah, Merkl, Philipp, Perez-Fernandez, Jorge , Williams, Lydia, Gerber, Jochen, Németh, Attila, Léger, Isabelle, Gadal, Olivier , Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast. The EMBO Journal 31 (16), pp. 3480-3493. Fulltext not available.

Reiter, Alarich, Steinbauer, Robert, Philippi, Anja, Gerber, Jochen, Tschochner, Herbert, Milkereit, Philipp and Griesenbeck, Joachim (2011) Reduction in Ribosomal Protein Synthesis Is Sufficient To Explain Major Effects on Ribosome Production after Short-Term TOR Inactivation in Saccharomyces cerevisiae. Molecular and Cellular Biology 31 (4), pp. 803-817. Fulltext not available.

Schwank, Katrin, Schmid, Catharina, Fremter, Tobias, Engel, Christoph , Milkereit, Philipp , Griesenbeck, Joachim and Tschochner, Herbert (2023) Features of yeast RNA polymerase I with special consideration of the lobe binding subunits. Biological Chemistry 404 (11-12), pp. 979-1002. Fulltext not available.

Schwank, Katrin, Schmid, Catharina, Fremter, Tobias, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2022) RNA polymerase I (Pol I) lobe-binding subunit Rpa12.2 promotes RNA cleavage and proofreading. Journal of Biological Chemistry 298 (5), p. 101862. Fulltext not available.

Teubl, Fabian (2020) Structural and Functional Studies on the Role of Noc3p for Large Ribosomal Subunit Maturation in Saccharomyces cerevisiae. PhD, Universität Regensburg.

Tremblay, Maxime, Charton, Romain, Wittner, Manuel, Levasseur, Geneviève, Griesenbeck, Joachim and Conconi, Antonio (2013) UV light-induced DNA lesions cause dissociation of yeast RNA polymerases-I and establishment of a specialized chromatin structure at rRNA genes. Nucleic Acids Research 42 (1), pp. 380-395. Fulltext not available.

Wieden, Hans-Joachim, Ohmayer, Uli , Perez-Fernandez, Jorge, Hierlmeier, Thomas, Pöll, Gisela, Williams, Lydia , Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2012) Local Tertiary Structure Probing of Ribonucleoprotein Particles by Nuclease Fusion Proteins. PLoS ONE 7 (8), e42449. Fulltext not available.

Wittner, Manuel, Hamperl, Stephan , Stöckl, Ulrike, Seufert, Wolfgang , Tschochner, Herbert, Milkereit, Philipp and Griesenbeck, Joachim (2011) Establishment and Maintenance of Alternative Chromatin States at a Multicopy Gene Locus. Cell 145 (4), pp. 543-554. Fulltext not available.