Publikationen von Lottaz, Claudio

Perez-Rubio, Paula, Lottaz, Claudio und Engelmann, Julia C. (2019) FastqPuri: high-performance preprocessing of RNA-seq data. BMC Bioinformatics 20 (1), S. 226. Volltext nicht vorhanden.

Perez-Rubio, Paula, Lottaz, Claudio und Engelmann, Julia C. (2018) FastqPuri: high-performance preprocessing of RNA-seq data. bioRxiv. (Eingereicht)

Lottaz, Claudio, Gronwald, Wolfram , Spang, Rainer und Engelmann, Julia C. (2017) High-Dimensional Profiling for Computational Diagnosis. In: Bioinformatics : Volume II: Structure, Function, and Applications. Methods in Molecular Biology, 1526. Springer, New York, S. 205-229. ISBN 978-1-4939-6611-0. Volltext nicht vorhanden.

Winkler, Thomas W., Kutalik, Zoltan, Gorski, Mathias, Lottaz, Claudio, Kronenberg, Florian und Heid, Iris M. (2014) EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data. Bioinformatics, btu621. Volltext nicht vorhanden.

Burghardt, Tillmann, Kastner, Jürgen, Suleiman, Hani, Rivera-Milla, Eric, Stepanova, Natalya, Lottaz, Claudio, Kubitza, Marion, Böger, Carsten A., Schmidt, Sarah, Gorski, Mathias, de Vries, Uwe, Schmidt, Helga, Hertting, Irmgard, Kopp, Jeffrey, Rascle, Anne, Moser, Markus, Heid, Iris M., Warth, Richard, Spang, Rainer, Wegener, Joachim, Mierke, Claudia T., Englert, Christoph und Witzgall, Ralph (2013) LMX1B is essential for the maintenance of differentiated podocytes in adult kidneys. Journal of the American Society of Nephrology : JASN 24 (11), S. 1830-1848. Volltext nicht vorhanden.

Krentz, S., Hof, J., Mendioroz, A., Vaggopoulou, R., Dörge, P., Lottaz, Claudio, Engelmann, Julia, Groeneveld, T. W. L., Körner, G., Seeger, K., Hagemeier, C., Henze, G., Eckert, C., von Stackelberg, A. und Kirschner-Schwabe, R. (2013) Prognostic value of genetic alterations in children with first bone marrow relapse of childhood B-cell precursor acute lymphoblastic leukemia. Leukemia 27 (2), S. 295-304. Volltext nicht vorhanden.

Seliger, Corinna, Leukel, Petra, Moeckel, Sylvia, Jachnik, Birgit, Lottaz, Claudio, Kreutz, Marina, Brawanski, Alexander, Proescholdt, Martin, Bogdahn, Ulrich, Bosserhoff, Anja-Katrin, Vollmann-Zwerenz, Arabel und Hau, Peter (2013) Lactate-Modulated Induction of THBS-1 Activates Transforming Growth Factor (TGF)-beta2 and Migration of Glioma Cells In Vitro. PloS one 8 (11), e78935.

Dolnik, Anna, Engelmann, Julia C., Scharfenberger-Schmeer, Maren, Mauch, Julian, Kelkenberg-Schade, Sabine, Haldemann, Berit, Fries, Tamara, Krönke, Jan, Kühn, Michael W. M., Paschka, Peter, Kayser, Sabine, Wolf, Stephan, Gaidzik, Verena I., Schlenk, Richard F., Rücker, Frank G., Döhner, Hartmut, Lottaz, Claudio, Döhner, Konstanze und Bullinger, Lars (2012) Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing. Blood 120 (18), e83-e92. Volltext nicht vorhanden.

Odoardi, Francesca, Sie, Christopher, Streyl, Kristina, Ulaganathan, Vijay K., Schläger, Christian, Lodygin, Dmitri, Heckelsmiller, Klaus, Nietfeld, Wilfried, Ellwart, Joachim, Klinkert, Wolfgang E. F., Lottaz, Claudio, Nosov, Mikhail, Brinkmann, Volker, Spang, Rainer, Lehrach, Hans, Vingron, Martin, Wekerle, Hartmut, Flügel-Koch, Cassandra und Flügel, Alexander (2012) T cells become licensed in the lung to enter the central nervous system. Nature 488 (7413), S. 675-679. Volltext nicht vorhanden.

Mulaw, M. A., Krause, A., Krause, A. J., Deshpande, A. J., Krause, L. F., Rouhi, A., La Starza, R., Borkhardt, A., Buske, C., Mecucci, C., Ludwig, W.-D., Lottaz, Claudio und Bohlander, S. K. (2012) CALM/AF10-positive leukemias show upregulation of genes involved in chromatin assembly and DNA repair processes and of genes adjacent to the breakpoint at 10p12. Leukemia 26 (5), S. 1012-1019. Volltext nicht vorhanden.

Ingersoll, Molly A., Spanbroek, Rainer, Lottaz, Claudio, Gautier, Emmanuel L., Frankenberger, Marion, Hoffmann, Reinhard, Lang, Roland, Haniffa, Muzlifah, Collin, Matthew, Tacke, Frank, Habenicht, Andreas J. R., Ziegler-Heitbrock, Loems und Randolph, Gwendalyn J. (2010) Comparison of gene expression profiles between human and mouse monocyte subsets. Blood 115 (3), e10-e19. Volltext nicht vorhanden.

Lottaz, Claudio, Beier, Dagmar, Meyer, Katharina, Kumar, Praveen, Hermann, Andreas, Schwarz, Johannes, Junker, Markus, Oefner, Peter J., Bogdahn, Ulrich, Wischhusen, J., Spang, Rainer, Storch, Alexander und Beier, Christoph P. (2010) Transcriptional profiles of CD133+ and CD133- glioblastoma-derived cancer stem cell lines suggest different cells of origin. Cancer research 70 (5), S. 2030-2040. Volltext nicht vorhanden.

Thieme, Marian, Lottaz, Claudio, Niederstätter, Harald, Parson, Walther, Spang, Rainer und Oefner, Peter J. (2009) ReseqChip: automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly. BMC bioinformatics 10, S. 440.

Almstetter, Martin F., Appel, Inka, Gruber, Michael, Lottaz, Claudio, Timischl, Birgit, Spang, Rainer, Dettmer, Katja und Oefner, Peter J. (2009) Integrative normalization and comparative analysis for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. Analytical chemistry 81 (14), S. 5731-5739. Volltext nicht vorhanden.

Dohm, Juliane C., Lottaz, Claudio, Borodina, Tatiana und Himmelbauer, Heinz (2008) Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Research 36 (16), e105.

Lottaz, Claudio, Kostka, Dennis und Spang, Rainer (2008) 26. Classification of Patients. In: Lengauer, Thomas, (ed.) Bioinformatics-From Genomes to Therapies. Wiley-VCH, Weinheim, S. 957-991. ISBN 9783527619368 (online). Volltext nicht vorhanden.

Lottaz, Claudio, Kostka, Dennis, Markowetz, Florian und Spang, Rainer (2008) 15. Computational diagnostics with gene expression profiles. In: Bioinformatics. Methods in Molecular Biology, 453 (15). Humana Press, Totowa, NJ, S. 281-296. ISBN 978-1-60327-428-9. Volltext nicht vorhanden.

Hoffmann, Reinhard, Lottaz, Claudio, Kühne, Thomas, Rolink, Antonius und Melchers, Fritz (2007) Neutrality, compensation, and negative selection during evolution of B-cell development transcriptomes. Molecular Biology and Evolution (Mol Biol Evol) 24 (12), S. 2610-2618. Volltext nicht vorhanden.

Lottaz, Claudio, Toedling, Joern und Spang, Rainer (2007) Annotation-based distance measures for patient subgroup discovery in clinical microarray studies. Bioinformatics 23 (17), S. 2256-2264. Volltext nicht vorhanden.

Dohm, Juliane C., Lottaz, Claudio, Borodina, Tatiana und Himmelbauer, Heinz (2007) SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 17 (11), S. 1697-1706. Volltext nicht vorhanden.

Bullinger, Lars, Rücker, Frank G., Kurz, Stephan, Du, Juan, Scholl, Claudia, Sander, Sandrine, Corbacioglu, Andrea, Lottaz, Claudio, Krauter, Jürgen, Fröhling, Stefan, Ganser, Arnold, Schlenk, Richard F., Döhner, Konstanze, Pollack, Jonathan R. und Döhner, Hartmut (2007) Gene-expression profiling identifies distinct subclasses of core binding factor acute myeloid leukemia. Blood 110 (4), S. 1291-1300. Volltext nicht vorhanden.

Kirschner-Schwabe, R., Lottaz, Claudio, Todling, J., Rhein, P., Karawajew, L., Eckert, C., von Stackelberg, A., Ungethum, U., Kostka, Dennis, Kulozik, A. E., Ludwig, W. D., Henze, G., Spang, Rainer, Hagemeier, C. und Seeger, K. (2006) Expression of late cell cycle genes and an increased proliferative capacity characterize very early relapse of childhood acute lymphoblastic leukemia. Clinical Cancer Research 12 (15), S. 4553-4561. Volltext nicht vorhanden.

Lottaz, Claudio, Yang, Xinan, Scheid, Stefanie und Spang, Rainer (2006) OrderedList - a bioconductor package for detecting similarity in ordered gene lists. Bioinformatics 22 (18), S. 2315-2316. Volltext nicht vorhanden.

Lottaz, Claudio und Spang, Rainer (2005) stam – a Bioconductor compliant R package for structured analysis of microarray data. BMC Bioinformatics 6, S. 211.

Lottaz, Claudio und Spang, Rainer (2005) Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data. Bioinformatics 21 (9), S. 1971-1978.

Lottaz, Claudio, Kostka, Dennis, Markowetz, Florian und Spang, Rainer (2005) Traces of molecular disease mechanisms on microarrays. Methods in Molecular Biology 453, S. 281-296. Volltext nicht vorhanden.

Lottaz, Claudio, Iseli, Christian, Jongeneel, C. Victor und Bucher, Philipp (2003) Modeling sequencing errors by combining Hidden Markov models. Bioinformatics 19 (Suppl2), ii103-ii112.

Lottaz, Claudio (2000) Collaborative Design using Solution Spaces. Dissertation, École Polytechnique Fédérale de Lausanne.

Lottaz, Claudio, Stouffs, Rudi und Smith, Ian (2000) Increasing Understanding During Collaboration Through Advanced Representations. ITcon : Journal of information technology in construction 5, S. 1-24.

Lottaz, Claudio, Clément, Denis, Faltings, Boi und Smith, I. F. C. (1999) Constraint-Based Support for Collaboration in Design and Construction. Journal of Computing in Civil Engineering 13 (1), S. 23-35. Volltext nicht vorhanden.

Lottaz, Claudio (1999) Rewriting numeric constraint satisfaction problems for consistency algorithms (short paper). In: Jaffar, Joxan, (ed.) Principles and Practice of Constraint Programming – CP’99. Lecture Notes in Computer Science, 1713. Springer, Berlin, S. 486-487. ISBN 978-3-540-48085-3 (online). 978-3-540-66626-4 (print). Volltext nicht vorhanden.

Lottaz, Claudio, Sam-Haroud, D., Faltings, B. und Smith, I. (1998) Constraint techniques for collaborative design. In: Proceedings Tenth IEEE International Conference on Tools with Artificial Intelligence (Cat. No.98CH36294). IEEE Computer Soc., Los Alamitos, Calif., S. 34-41. ISBN 0-7803-5214-9. Volltext nicht vorhanden.

Lottaz, Claudio, Stalker, Ruth und Smith, Ian (1998) Constraint solving and preference activation for interactive design. AI EDAM - Artificial Intelligence for Engineering Design, Analysis and Manufacturing 12, S. 12-13. Volltext nicht vorhanden.

Lottaz, Claudio (1996) Constraint Solving, Preference Activation and Solution Adaptation in IDIOM. Swiss Federal Institute of Technology (EPFL), Lausanne, Schweiz. Volltext nicht vorhanden.

Smith, Ian, Stalker, Ruth und Lottaz, Claudio (1996) Creating Design Objects from Cases for Interactive Spatial Composition. In: Gero, J. S. und Sudweeks, F., (eds.) Artificial Intelligence in Design ’96 (Boston MA, USA). Springer, Dordrecht, S. 97-116. ISBN 978-94-009-0279-4 (online), 978-94-010-6610-5 (Print). Volltext nicht vorhanden.

Smith, Ian, Lottaz, Claudio und Faltings, Boi (1995) Spatial composition using cases: IDIOM. In: Veloso, M. und Aamodt, A., (eds.) Case-Based Reasoning Research and Development. ICCBR 1995. Lecture Notes in Computer Science (Lecture Notes in Artificial Intelligence), 1010. Springer, Berlin, S. 88-97. ISBN 978-3-540-48446-2 (online), 978-3-540-60598-0 (print). Volltext nicht vorhanden.