Einträge von Grohmann, Dina auf dem Publikationsserver

Hanelt, Tiana Nicole, Treiber, Nora, Treiber, Thomas, Lehmann, Gerhard, Eichner, Norbert, Rothmeier, Tamara, Schmid, Georg, Reichelt, Robert, Zambelli, Federico, Pavesi, Giulio, Grohmann, Dina und Meister, Gunter (2024) Endo-bind-n-seq: identifying RNA motifs of RNA binding proteins isolated from endogenous sources. Life Science Alliance 8 (2), e202402782.

Stöckl, Richard , Nißl, Laura, Reichelt, Robert, Rachel, Reinhard, Grohmann, Dina und Grünberger, Felix (2023) The transcriptional regulator EarA and intergenic terminator sequences modulate archaellation in Pyrococcus furiosus. Frontiers in Microbiology 14.

Grünberger, Felix , Schmidt, Georg, El Ahmad, Zubeir, Fenk, Martin, Vogl, Katharina, Reichelt, Robert Martin , Hausner, Winfried , Urlaub, Henning, Lenz, Christof, Grohmann, Dina , Vogel, Joerg und Dong, Xiuzhu (2023) Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics. mBio.

Seeholzer, Theresa, Tarau, Daniela , Hollendonner, Lea, Auer, Andrea , Rachel, Reinhard, Grohmann, Dina , Giessibl, Franz J. und Weymouth, Alfred J. (2023) A Next-Generation qPlus-Sensor-Based AFM Setup: Resolving Archaeal S-Layer Protein Structures in Air and Liquid. The Journal of Physical Chemistry B 127 (31), S. 6949-6957. Zugang zum Volltext eingeschränkt.

Grünberger, Felix , Jüttner, Michael, Knüppel, Robert Michael, Ferreira-Cerca, Sébastien und Grohmann, Dina (2023) Nanopore-based RNA sequencing deciphers the formation, processing, and modification steps of rRNA intermediates in archaea. RNA 29 (8), S. 1255-1273.

Dengler, Linda , Meier, Julia, Klingl, Andreas, Nißl, Laura, Bellack, Annett , Grohmann, Dina , Rachel, Reinhard und Huber, Harald (2023) A novel interdomain consortium from a Costa Rican oil well composed of Methanobacterium cahuitense sp. nov. and Desulfomicrobium aggregans sp. nov. Archives of Microbiology 205 (5).

Agam, Ganesh , Gebhardt, Christian, Popara, Milana , Mächtel, Rebecca, Folz, Julian, Ambrose, Benjamin, Chamachi, Neharika , Chung, Sang Yoon , Craggs, Timothy D. , de Boer, Marijn, Grohmann, Dina, Ha, Taekjip, Hartmann, Andreas , Hendrix, Jelle, Hirschfeld, Verena, Hübner, Christian G., Hugel, Thorsten, Kammerer, Dominik, Kang, Hyun-Seo, Kapanidis, Achillefs N., Krainer, Georg, Kramm, Kevin, Lemke, Edward A., Lerner, Eitan , Margeat, Emmanuel , Martens, Kirsten, Michaelis, Jens , Mitra, Jaba, Moya Muñoz, Gabriel G., Quast, Robert B. , Robb, Nicole C., Sattler, Michael , Schlierf, Michael , Schneider, Jonathan, Schröder, Tim, Sefer, Anna, Tan, Piau Siong, Thurn, Johann, Tinnefeld, Philip, van Noort, John, Weiss, Shimon, Wendler, Nicolas, Zijlstra, Niels, Barth, Anders , Seidel, Claus A. M., Lamb, Don C. und Cordes, Thorben (2023) Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods 20 (4), S. 523-535. Volltext nicht vorhanden.

Reichelt, Robert, Rothmeier, Tamara, Grünberger, Felix, Willkomm, Sarah, Bruckmann, Astrid, Hausner, Winfried und Grohmann, Dina (2023) The archaeal Lsm protein from Pyrococcus furiosus binds co-transcriptionally to poly(U)-rich target RNAs. Biological Chemistry 404 (11-12), S. 1085-1100. Volltext nicht vorhanden.

Wörle, Elisabeth, Newman, Anthony, D’Silva, Jovita, Burgio, Gaetan und Grohmann, Dina (2022) Allosteric activation of CRISPR-Cas12a requires the concerted movement of the bridge helix and helix 1 of the RuvC II domain. Nucleic Acids Research 50 (17), S. 10153-10168.

Dengler, Linda , Meier, Julia, Grünberger, Felix , Bellack, Annett , Rachel, Reinhard , Grohmann, Dina und Huber, Harald (2022) Methanofollis propanolicus sp. nov., a novel archaeal isolate from a Costa Rican oil well that uses propanol for methane production. Archives of Microbiology 204 (9).

Willkomm, Sarah , Jakob, Leonhard, Kramm, Kevin, Graus, Veronika, Neumeier, Julia, Meister, Gunter und Grohmann, Dina (2022) Single-molecule FRET uncovers hidden conformations and dynamics of human Argonaute 2. Nature Communications 13, art.no.3825.

Grünberger, Felix, Ferreira-Cerca, Sébastien und Grohmann, Dina (2021) Nanopore sequencing of RNA and cDNA molecules in Escherichia coli. RNA 28 (3), S. 400-417.

Grohmann, Dina, Weixlbaumer, Albert, Grünberger, Felix und Werner, Finn (2021) Coupling of Transcription and Translation in Archaea: Cues From the Bacterial World. Frontiers in Microbiology 2021 (12), S. 661827. (Eingereicht)

Grünberger, Felix, Reichelt, Robert, Waege, Ingrid, Ned, Verena, Bronner, Korbinian, Kaljanac, Marcell, Weber, Nina, El Ahmad, Zubeir, Knauss, Lena, Madej, M. Gregor , Ziegler, Christine, Grohmann, Dina und Hausner, Winfried (2021) CopR, a Global Regulator of Transcription to Maintain Copper Homeostasis in Pyrococcus furiosus. Frontiers in Microbiology 11 (613532), S. 1-18.

Wörle, Elisabeth, Jakob, Leonhard, Schmidbauer, Andreas, Zinner, Gabriel und Grohmann, Dina (2021) Decoupling the bridge helix of Cas12a results in a reduced trimming activity, increased mismatch sensitivity and impaired conformational transitions. Nucleic Acids Research 49 (9), S. 5278-5293. Volltext nicht vorhanden.

Aldag, Pierre, Welzel, Fabian, Jakob, Leonhard, Schmidbauer, Andreas, Rutkauskas, Marius, Fettes, Fergus, Grohmann, Dina und Seidel, Ralf (2021) Probing the stability of the SpCas9–DNA complex after cleavage. Nucleic Acids Research 49 (21), S. 12411-12421. Volltext nicht vorhanden.

Kramm, Kevin, Schröder, Tim, Gouge, Jerome , Vera, Andrés Manuel , Gupta, Kapil , Heiss, Florian B. , Liedl, Tim , Engel, Christoph, Berger, Imre , Vannini, Alessandro , Tinnefeld, Philip und Grohmann, Dina (2020) DNA origami-based single-molecule force spectroscopy elucidates RNA Polymerase III pre-initiation complex stability. Nature Communications 11 (2828), S. 1-12.

Willkomm, Sarah, Moissl, Benedikt, Michel, Henri und Grohmann, Dina (2020) Die erstaunliche Vielseitigkeit der Argonauten-Crew. Biospektrum 26, S. 603-605.

Buckley, Ryan J., Kramm, Kevin, Cooper, Christopher D. O. , Grohmann, Dina und Bolt, Edward L. (2020) Mechanistic insights into Lhr helicase function in DNA repair. Biochemical Journal 477 (16), S. 2935-2947. Volltext nicht vorhanden.

Grünberger, Felix, Reichelt, Robert Martin , Bunk, Boyke, Spröer, Cathrin, Overmann, Jörg, Rachel, Reinhard , Grohmann, Dina und Hausner, Winfried (2019) Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription. Frontiers in Microbiology 2019 (10), S. 1603.

Jakob, Leonhard, Gust, Alexander und Grohmann, Dina (2018) Evaluation and optimisation of unnatural amino acid incorporation and bioorthogonal bioconjugation for site-specific fluorescent labelling of proteins expressed in mammalian cells. Biochemistry and Biophysics Reports 2019 (17), S. 1-9.

Dexl, Stefan Albin, Reichelt, Robert, Kraatz, Katharina, Schulz, Sarah, Grohmann, Dina, Bartlett, Michael und Thomm, Michael (2018) Displacement of the transcription factor B reader domain during transcription initiation. Nucleic Acids Research 46 (19), S. 10066-10081.

Gust, Alexander, Jakob, Leonhard, Zeitler, Daniela M., Bruckmann, Astrid, Kramm, Kevin, Willkomm, Sarah, Tinnefeld, Philip, Meister, Gunter und Grohmann, Dina (2018) Site-Specific Labelling of Native Mammalian Proteins for Single-Molecule FRET Measurements. ChemBioChem 19 (8), S. 780-783. Volltext nicht vorhanden.

Zander, Adrian, Willkomm, Sarah, Ofer, Sapir, van Wolferen, Marleen, Egert, Luisa, Buchmeier, Sabine, Stöckl, Sarah, Tinnefeld, Philip, Schneider, Sabine , Klingl, Andreas, Albers, Sonja-Verena, Werner, Finn und Grohmann, Dina (2017) Guide-independent DNA cleavage by archaeal Argonaute from Methanocaldococcus jannaschii. Nature Microbiology 2 (6). Volltext nicht vorhanden.

Gouge, Jerome , Guthertz, Nicolas, Kramm, Kevin, Dergai, Oleksandr, Abascal-Palacios, Guillermo, Satia, Karishma, Cousin, Pascal, Hernandez, Nouria, Grohmann, Dina und Vannini, Alessandro (2017) Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nature Communications 8 (1). Volltext nicht vorhanden.

Kucher, Svetlana, Korneev, Sergei, Tyagi, Swati, Apfelbaum, Ronja , Grohmann, Dina, Lemke, Edward A. , Klare, Johann P. , Steinhoff, Heinz-Jürgen und Klose, Daniel (2017) Orthogonal spin labeling using click chemistry for in vitro and in vivo applications. Journal of Magnetic Resonance 275, S. 38-45. Volltext nicht vorhanden.

Willkomm, Sarah, Oellig, Christine A., Zander, Adrian, Restle, Tobias, Keegan, Ronan, Grohmann, Dina und Schneider, Sabine (2017) Structural and mechanistic insights into an archaeal DNA-guided Argonaute protein. Nature Microbiology 2 (6). Volltext nicht vorhanden.

Yuan, Y. Adam, Willkomm, Sarah, Zander, Adrian, Grohmann, Dina und Restle, Tobias (2016) Mechanistic Insights into Archaeal and Human Argonaute Substrate Binding and Cleavage Properties. PLOS ONE 11 (10), e0164695. Volltext nicht vorhanden.

Nickels, Philipp C., Wünsch, Bettina, Holzmeister, Phil, Bae, Wooli, Kneer, Luisa M., Grohmann, Dina, Tinnefeld, Philip und Liedl, Tim (2016) Molecular force spectroscopy with a DNA origami–based nanoscopic force clamp. Science 354 (6310), S. 305-307. Volltext nicht vorhanden.

Sheppard, Carol , Blombach, Fabian , Belsom, Adam, Schulz, Sarah, Daviter, Tina, Smollett, Katherine, Mahieu, Emilie, Erdmann, Susanne , Tinnefeld, Philip, Garrett, Roger, Grohmann, Dina, Rappsilber, Juri und Werner, Finn (2016) Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP. Nature Communications 7 (1). Volltext nicht vorhanden.

Jakob, Leonhard, Treiber, Thomas, Treiber, Nora, Gust, Alexander, Kramm, Kevin, Hansen, Kerrin, Stotz, Mathias, Wankerl, Ludwig, Herzog, Franz, Hannus, Stefan, Grohmann, Dina und Meister, Gunter (2016) Structural and functional insights into the fly microRNA biogenesis factor Loquacious. RNA 22 (3), S. 383-396. Volltext nicht vorhanden.

Schulz, Sarah, Gietl, Andreas, Smollett, Katherine , Tinnefeld, Philip, Werner, Finn und Grohmann, Dina (2016) TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle. Proceedings of the National Academy of Sciences 113 (13), E1816-E1825. Volltext nicht vorhanden.

Pasquale, Francesca Di, Fischer, Daniela, Grohmann, Dina, Restle, Tobias, Geyer, Armin und Marx, Andreas (2008) Opposed Steric Constraints in Human DNA Polymerase β and E. coli DNA Polymerase I. Journal of the American Chemical Society 130 (32), S. 10748-10757. Volltext nicht vorhanden.