Bibliography of the Universität Regensburg

Höllerer, Simon, Desczyk, Charlotte, Muro, Ricardo Farrera and Jeschek, Markus (2023) From sequence to function and back – High-throughput sequence-function mapping in synthetic biology. Current Opinion in Systems Biology 37, p. 100499.

Stöckl, Richard , Nißl, Laura, Reichelt, Robert, Rachel, Reinhard, Grohmann, Dina and Grünberger, Felix (2023) The transcriptional regulator EarA and intergenic terminator sequences modulate archaellation in Pyrococcus furiosus. Frontiers in Microbiology 14.

Grünberger, Felix , Schmidt, Georg, El Ahmad, Zubeir, Fenk, Martin, Vogl, Katharina, Reichelt, Robert Martin , Hausner, Winfried , Urlaub, Henning, Lenz, Christof, Grohmann, Dina , Vogel, Joerg and Dong, Xiuzhu (2023) Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics. mBio.

Eckl, Daniel Bernhard (2023) Photodynamic inactivation – the role of ions and future application perspectives. PhD, Universität Regensburg.

Dengler, Linda , Meier, Julia, Klingl, Andreas, Nißl, Laura, Bellack, Annett , Grohmann, Dina , Rachel, Reinhard and Huber, Harald (2023) A novel interdomain consortium from a Costa Rican oil well composed of Methanobacterium cahuitense sp. nov. and Desulfomicrobium aggregans sp. nov. Archives of Microbiology 205 (5).

Eckl, Daniel Bernhard , Hoffmann, Anja Karen, Landgraf, Nicole, Kalb, Larissa, Bäßler, Pauline, Wallner, Susanne, Eichner, Anja, Huber, Harald , Hackbarth, Steffen and Bäumler, Wolfgang (2023) Photodynamic inactivation of different pathogenic bacteria on human skin using a novel photosensitizer hydrogel. Journal of the European Academy of Dermatology and Venereology.

Höllerer, Simon and Jeschek, Markus (2023) Ultradeep characterisation of translational sequence determinants refutes rare-codon hypothesis and unveils quadruplet base pairing of initiator tRNA and transcript. Nucleic Acids Research 51 (5), pp. 2377-2396.

Wörle, Elisabeth Johanna Viera (2022) Cas12a is governed in its Activity and Conformational Transitions by the Two Interplaying Key Elements Helix 1 and Bridge Helix. PhD, Universität Regensburg.

Eckl, Daniel Bernhard , Landgraf, Nicole, Hoffmann, Anja K., Eichner, Anja, Huber, Harald and Bäumler, Wolfgang (2022) Photodynamic Inactivation of Bacteria in Ionic Environments Using the Photosensitizer SAPYR and the Chelator Citrate. Photochemistry and Photobiology 99 (2), pp. 716-731.

Kalb, Larissa, Bäßler, Pauline, Schneider-Brachert, Wulf and Eckl, Daniel Bernhard (2022) Antimicrobial Photodynamic Coatings Reduce the Microbial Burden on Environmental Surfaces in Public Transportation—A Field Study in Buses. International Journal of Environmental Research and Public Health 19 (4), p. 2325.

Muehler, Denise , Brandl, Elena, Hiller, Karl-Anton, Cieplik, Fabian and Maisch, Tim (2022) Membrane damage as mechanism of photodynamic inactivation using Methylene blue and TMPyP in Escherichia coli and Staphylococcus aureus. Photochemical & Photobiological Sciences.

Kaul, Anja, Böllmann, Andrea, Thema, Martin, Kalb, Larissa, Stöckl, Richard, Huber, Harald, Sterner, Michael and Bellack, Annett (2022) Combining a robust thermophilic methanogen and packing material with high liquid hold-up to optimize biological methanation in trickle-bed reactors. Bioresource Technology 345, p. 126524. Fulltext not available.

Gust, Alexander (2021) Entwicklung neuer einzelmolekülspektroskopischer Methoden zur Analyse biomolekularer Komplexe im RNA silencing Prozess. PhD, Universität Regensburg.

Grünberger, Felix (2021) Genome and transcriptome architecture in Pyrococcus furiosus. PhD, Universität Regensburg.

Eckl, Daniel Bernhard, Eben, Stefanie Susanne, Schottenhaml, Laura, Eichner, Anja, Vasold, Rudolf, Späth, Andreas, Bäumler, Wolfgang and Huber, Harald (2021) Interplay of phosphate and carbonate ions with flavin photosensitizers in photodynamic inactivation of bacteria. PLOS ONE 16 (6), e0253212.

Liu, Li, Brown, Philip C., Könneke, Martin , Huber, Harald, König, Simone, Berg, Ivan A. and Tamaki, Hideyuki (2021) Convergent Evolution of a Promiscuous 3-Hydroxypropionyl-CoA Dehydratase/Crotonyl-CoA Hydratase in Crenarchaeota and Thaumarchaeota. mSphere 6 (1). Fulltext not available.

Perez-Garcia, Pablo , Kobus, Stefanie, Gertzen, Christoph G. W., Hoeppner, Astrid, Holzscheck, Nicholas , Strunk, Christoph Heinrich, Huber, Harald, Jaeger, Karl-Erich, Gohlke, Holger, Kovacic, Filip , Smits, Sander H. J., Streit, Wolfgang R. and Chow, Jennifer (2021) A promiscuous ancestral enzyme´s structure unveils protein variable regions of the highly diverse metallo-β-lactamase family. Communications Biology 4 (1). Fulltext not available.

Thema, Martin, Weidlich, Tobias, Kaul, Anja, Böllmann, Andrea, Huber, Harald, Bellack, Annett, Karl, Jürgen and Sterner, Michael (2021) Optimized biological CO2-methanation with a pure culture of thermophilic methanogenic archaea in a trickle-bed reactor. Bioresource Technology 333, p. 125135. Fulltext not available.

Bashir, Alexandra Kristin, Wink, Lisa, Duller, Stefanie , Schwendner, Petra, Cockell, Charles, Rettberg, Petra, Mahnert, Alexander, Beblo-Vranesevic, Kristina, Bohmeier, Maria, Rabbow, Elke, Gaboyer, Frédéric, Westall, Frances, Walter, Nicolas, Cabezas, Patricia, Garcia-Descalzo, Laura, Gomez, Felipe , Malki, Mustapha, Amils, Ricardo, Ehrenfreund, Pascale, Monaghan, Euan, Vannier, Pauline , Marteinsson, Viggo , Erlacher, Armin, Tanski, George, Strauss, Jens , Bashir, Mina, Riedo, Andreas and Moissl-Eichinger, Christine (2021) Taxonomic and functional analyses of intact microbial communities thriving in extreme, astrobiology-relevant, anoxic sites. Microbiome 9 (1). Fulltext not available.

Kramm, Kevin Oliver (2020) Single-molecule analysis of transcription initiation in archaea and eukaryotes. PhD, Universität Regensburg.

Prantl, Lukas, Eigenberger, Andreas, Gehmert, Sebastian , Haerteis, Silke, Aung, Thiha, Rachel, Reinhard, Jung, Ernst Michael and Felthaus, Oliver (2020) Enhanced Resorption of Liposomal Packed Vitamin C Monitored by Ultrasound. Journal of Clinical Medicine 9 (6), p. 1616.

Kalbitzer, Hans Robert, Kreitner, Raphael, Munte, Claudia E., Singer, Katrin, Stetter, Karl Otto, Horn, Gudrun and Kremer, Werner (2020) Complete sequential assignment and secondary structure prediction of the cannulae forming protein CanA from the hyperthermophilic archaeon Pyrodictium abyssi. Biomolecular NMR Assignments 14, pp. 141-146.

Liu, Li, Huber, Harald and Berg, Ivan A. (2020) Enzymes Catalyzing Crotonyl-CoA Conversion to Acetoacetyl-CoA During the Autotrophic CO2 Fixation in Metallosphaera sedula. Frontiers in Microbiology 11. Fulltext not available.

Eckl, Daniel B. , Huber, Harald and Bäumler, Wolfgang (2020) First Report on Photodynamic Inactivation of Archaea Including a Novel Method for High-Throughput Reduction Measurement. Photochemistry and Photobiology 96, pp. 883-889.

Beblo-Vranesevic, Kristina, Bohmeier, Maria, Schleumer, Sven, Rabbow, Elke, Perras, Alexandra K., Moissl-Eichinger, Christine, Schwendner, Petra, Cockell, Charles S., Vannier, Pauline, Marteinsson, Viggo T. , Monaghan, Euan P., Riedo, Andreas, Ehrenfreund, Pascale, Garcia-Descalzo, Laura , Gómez, Felipe , Malki, Moustafa, Amils, Ricardo, Gaboyer, Frédéric, Hickman-Lewis, Keyron, Westall, Frances, Cabezas, Patricia , Walter, Nicolas and Rettberg, Petra (2020) Impact of Simulated Martian Conditions on (Facultatively) Anaerobic Bacterial Strains from Different Mars Analogue Sites. Current Issues in Molecular Biology, pp. 103-122. Fulltext not available.

Eder, Wolfgang , Tindall, Brian J., Huber, Harald, Peplies, Jörg and Wirth, Reinhard (2020) Recognition of the unsuitability of DSM 12173 as the deposited type strain of Thermocrinis ruber Huber et al. 1999, recognition of DSM 23557 as an authentic sub-culture of strain OC 1/4, the nomenclatural type of Thermocrinis ruber Huber et al. 1999 and an emended description of Thermocrinis ruber Huber et al. 1999. Archives of Microbiology 202 (6), pp. 1559-1562. Fulltext not available.

Kuhns, Martin, Trifunović, Dragan, Huber, Harald and Müller, Volker (2020) The Rnf complex is a Na+ coupled respiratory enzyme in a fermenting bacterium, Thermotoga maritima. Communications Biology 3 (1). Fulltext not available.

Douthwaite, Stephen, Grosjean, Henri, Huber, Harald , Kirpekar, Finn , Havelund, Jesper F, Auxilien, Sylvie and Rose, Simon (2020) The hyperthermophilic partners Nanoarchaeum and Ignicoccus stabilize their tRNA T-loops via different but structurally equivalent modifications. Nucleic Acids Research 48 (12), pp. 6906-6918. Fulltext not available.

Grünberger, Felix, Reichelt, Robert Martin , Bunk, Boyke, Spröer, Cathrin, Overmann, Jörg, Rachel, Reinhard , Grohmann, Dina and Hausner, Winfried (2019) Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription. Frontiers in Microbiology 2019 (10), p. 1603.

Kreuter, Lydia J., Weinfurtner, Andrea, Ziegler, Alexander, Weigl, Julia, Hoffmann, Jan, Morgner, Nina, Müller, Volker, Huber, Harald and Metcalf, William W. (2019) Purification of a Crenarchaeal ATP Synthase in the Light of the Unique Bioenergetics of Ignicoccus Species. Journal of Bacteriology 201 (7). Fulltext not available.

Thema, Martin, Weidlich, Tobias, Hörl, Manuel, Bellack, Annett, Mörs, Friedemann, Hackl, Florian, Kohlmayer, Matthias, Gleich, Jasmin, Stabenau, Carsten, Trabold, Thomas, Neubert, Michael, Ortloff, Felix, Brotsack, Raimund, Schmack, Doris, Huber, Harald, Hafenbradl, Doris, Karl, Jürgen and Sterner, Michael (2019) Biological CO2-Methanation: An Approach to Standardization. Energies 12 (9), p. 1670. Fulltext not available.

Thema, M., Weidlich, T., Hörl, M., Bellack, Annett and Huber, Harald (2019) Biological CO2-Methanation: an Approach to Standardization. Energies 12, p. 1670.

Reichelt-Wurm, Simone, Wirtz, Tobias, Chittka, Dominik, Lindenmeyer, Maja, Reichelt, Robert M., Beck, Sebastian, Politis, Panagiotis, Charonis, Aristidis, Kretz, Markus, Huber, Tobias B., Liu, Shuya, Banas, Bernhard and Banas, Miriam C. (2019) Glomerular expression pattern of long non-coding RNAs in the type 2 diabetes mellitus BTBR mouse model. Scientific Reports 9 (1). Fulltext not available.

Garcia-Descalzo, Laura , Parro, Victorino, García-Villadangos, Miriam, Cockell, Charles S., Moissl-Eichinger, Christine, Perras, Alex, Rettberg, Petra , Beblo-Vranesevic, Kristina , Bohmeier, Maria, Rabbow, Elke, Westall, Frances, Gaboyer, Frédéric, Amils, Ricardo, Malki, Moustafa, Marteinsson, Viggo , Vannier, Pauline, Ehrenfreund, Pascale, Monaghan, Euan, Riedo, Andreas , Cabezas, Patricia, Walter, Nicolas and Gómez, Felipe Gómez (2019) Microbial Markers Profile in Anaerobic Mars Analogue Environments Using the LDChip (Life Detector Chip) Antibody Microarray Core of the SOLID (Signs of Life Detector) Platform. Microorganisms 7 (9), p. 365. Fulltext not available.

Huwiler, Simona G. , Löffler, Claudia, Anselmann, Sebastian E. L., Stärk, Hans-Joachim, von Bergen, Martin, Flechsler, Jennifer, Rachel, Reinhard and Boll, Matthias (2019) One-megadalton metalloenzyme complex inGeobacter metallireducensinvolved in benzene ring reduction beyond the biological redox window. Proceedings of the National Academy of Sciences 116 (6), pp. 2259-2264. Fulltext not available.

Bülow, Sigrid, Zeller, Lisa, Werner, Maren, Toelge, Martina, Holzinger, Jonas, Entzian, Clemens, Schubert, Thomas, Waldow, Franziska, Gisch, Nicolas, Hammerschmidt, Sven and Gessner, André (2018) Bactericidal/Permeability-Increasing Protein Is an Enhancer of Bacterial Lipoprotein Recognition. Frontiers in Immunology 9 (2768), pp. 1-16.

Ndumbi, Patricia, Freidl, Gudrun S., Williams, Christopher J., Mårdh, Otilia, Varela, Carmen, Avellón, Ana, Friesema, Ingrid, Vennema, Harry, Beebeejaun, Kazim, Ngui, Siew Lin, Edelstein, Michael, Smith-Palmer, Alison, Murphy, Niamh, Dean, Jonathan, Faber, Mirko , Wenzel, Jürgen J. , Kontio, Mia, Müller, Luise, Midgley, Sofie Elisabeth, Sundqvist, Lena, Ederth, Josefine Lundberg, Roque-Afonso, Anne-Marie, Couturier, Elisabeth, Klamer, Sofieke, Rebolledo, Javiera, Suin, Vanessa, Aberle, Stephan W., Schmid, Daniela, De Sousa, Rita, Augusto, Gonçalo Figueiredo , Alfonsi, Valeria, Del Manso, Martina, Ciccaglione, Anna Rita, Mellou, Kassiani, Hadjichristodoulou, Christos, Donachie, Alastair, Borg, Maria-Louise, Sočan, Maja, Poljak, Mario and Severi, Ettore (2018) Hepatitis A outbreak disproportionately affecting men who have sex with men (MSM) in the European Union and European Economic Area, June 2016 to May 2017. Eurosurveillance 23 (33).

Cockell, C. S., Schwendner, P. and Perras, A. (2018) Anaerobic microorganisms in astrobiological analogue environments: from field site to culture collection. International Journal of Astrobiology 17, pp. 314-328.

Schwendner, Petra, Bohmeier, Maria, Rettberg, Petra, Beblo-Vranesevic, Kristina, Gaboyer, Frédéric, Moissl-Eichinger, Christine , Perras, Alexandra K., Vannier, Pauline , Marteinsson, Viggó T. , Garcia-Descalzo, Laura , Gómez, Felipe , Malki, Moustafa, Amils, Ricardo, Westall, Frances, Riedo, Andreas, Monaghan, Euan P., Ehrenfreund, Pascale, Cabezas, Patricia, Walter, Nicolas and Cockell, Charles (2018) Beyond Chloride Brines: Variable Metabolomic Responses in the Anaerobic Organism Yersinia intermedia MASE-LG-1 to NaCl and MgSO4 at Identical Water Activity. Frontiers in Microbiology 9. Fulltext not available.

Wu, Cong-Cong, Jiang, Xuan , Wang, Xian-Zhang, Liu, Xi-Juan, Li, Xiao-Jun, Yang, Bo, Ye, Han-Qing, Harwardt, Thomas, Jiang, Man , Xia, Hui-Min, Wang, Wei, Britt, William J., Paulus, Christina , Nevels, Michael , Luo, Min-Hua and Sandri-Goldin, Rozanne M. (2018) Human Cytomegalovirus Immediate Early 1 Protein Causes Loss of SOX2 from Neural Progenitor Cells by Trapping Unphosphorylated STAT3 in the Nucleus. Journal of Virology 92 (17). Fulltext not available.

Dexl, Stefan Albin (2017) Functional interactions of the Transcription Factor B during transcription initiation in Pyrococcus furiosus. PhD, Universität Regensburg.

Heyam, Alex , Coupland, Claire E., Dégut, Clément, Haley, Ruth A., Baxter, Nicola J., Jakob, Leonhard, Aguiar, Pedro M. , Meister, Gunter, Williamson, Michael P., Lagos, Dimitris and Plevin, Michael J. (2017) Conserved asymmetry underpins homodimerization of Dicer-associated double-stranded RNA-binding proteins. Nucleic Acids Research 45 (21), pp. 12577-12584. Fulltext not available.

Koskinen, Kaisa , Pausan, Manuela R. , Perras, Alexandra K., Beck, Michael, Bang, Corinna , Mora, Maximilian, Schilhabel, Anke, Schmitz, Ruth, Moissl-Eichinger, Christine , Schleper, Christa M. and Jansson, Janet K. (2017) First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin. mBio 8 (6). Fulltext not available.

Moissl-Eichinger, Christine , Probst, Alexander J., Birarda, Giovanni, Auerbach, Anna, Koskinen, Kaisa , Wolf, Peter and Holman, Hoi-Ying N. (2017) Human age and skin physiology shape diversity and abundance of Archaea on skin. Scientific Reports 7 (1). Fulltext not available.

Koskinen, Kaisa , Rettberg, Petra, Pukall, Rüdiger, Auerbach, Anna, Wink, Lisa, Barczyk, Simon, Perras, Alexandra, Mahnert, Alexander, Margheritis, Diana, Kminek, Gerhard and Moissl-Eichinger, Christine (2017) Microbial biodiversity assessment of the European Space Agency’s ExoMars 2016 mission. Microbiome 5 (1). Fulltext not available.

Gaboyer, F., Le Milbeau, C. , Bohmeier, M., Schwendner, P., Vannier, P. , Beblo-Vranesevic, K., Rabbow, E., Foucher, F., Gautret, P., Guégan, R., Richard, A., Sauldubois, A., Richmann, P., Perras, A. K., Moissl-Eichinger, C. , Cockell, C. S., Rettberg, P., Marteinsson, , Monaghan, E., Ehrenfreund, P., Garcia-Descalzo, L. , Gomez, F. , Malki, M., Amils, R., Cabezas, P., Walter, N. and Westall, F. (2017) Mineralization and Preservation of an extremotolerant Bacterium Isolated from an Early Mars Analog Environment. Scientific Reports 7 (1). Fulltext not available.

Schwendner, Petra, Mahnert, Alexander, Koskinen, Kaisa , Moissl-Eichinger, Christine , Barczyk, Simon, Wirth, Reinhard, Berg, Gabriele and Rettberg, Petra (2017) Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing. Microbiome 5 (1). Fulltext not available.

Amendola, Roberto, Beblo-Vranesevic, Kristina, Bohmeier, Maria, Perras, Alexandra K., Schwendner, Petra, Rabbow, Elke , Moissl-Eichinger, Christine, Cockell, Charles S., Pukall, Rüdiger , Vannier, Pauline , Marteinsson, Viggo T., Monaghan, Euan P., Ehrenfreund, Pascale , Garcia-Descalzo, Laura , Gómez, Felipe, Malki, Moustafa, Amils, Ricardo, Gaboyer, Frédéric, Westall, Frances, Cabezas, Patricia, Walter, Nicolas and Rettberg, Petra (2017) The responses of an anaerobic microorganism, Yersinia intermedia MASE-LG-1 to individual and combined simulated Martian stresses. PLOS ONE 12 (10), e0185178. Fulltext not available.

Wolf, Axel, Moissl-Eichinger, Christine , Perras, Alexandra, Koskinen, Kaisa , Tomazic, Peter V. and Thurnher, Dietmar (2017) The salivary microbiome as an indicator of carcinogenesis in patients with oropharyngeal squamous cell carcinoma: A pilot study. Scientific Reports 7 (1). Fulltext not available.

Hausner, Winfried , Reichelt, Robert Martin, Gindner, Antonia and Thomm, Michael (2016) Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus. BMC Genomics 17 (40), pp. 1-18.

Seistrup, Kenneth H., Rose, Simon, Birkedal, Ulf, Nielsen, Henrik, Huber, Harald and Douthwaite, Stephen (2016) Bypassing rRNA methylation by RsmA/Dim1during ribosome maturation in the hyperthermophilic archaeonNanoarchaeum equitans. Nucleic Acids Research, gkw839. Fulltext not available.

Wang, Hong X., Douglas, Lois M., Veselá, Petra, Rachel, Reinhard, Malinsky, Jan, Konopka, James B. and Lew, Daniel J. (2016) Eisosomes promote the ability of Sur7 to regulate plasma membrane organization in Candida albicans. Molecular Biology of the Cell 27 (10), pp. 1663-1675. Fulltext not available.

Küper, Ulf (2011) Untersuchungen zur Energiegewinnung des hyperthermophilen, schwefelreduzierenden Archaeons Ignicoccus hospitalis. PhD, Universität Regensburg.

Meyer, Carolin (2010) Die Fibers von Ignicoccus hospitalis: Ultrastruktur, Verankerung und molekularbiologische Untersuchungen. PhD, Universität Regensburg.

Kessler, Alexandra (2006) Untersuchungen zur Transkription der Genome der Rudiviren SIRV1 und SIRV2 des hyperthermophilen Archaeums Sulfolobus, in vivo und in vitro. PhD, Universität Regensburg.

Hohn, Michael (2005) Nachweis neuartiger Wirts-Parasiten-Systeme bei hyperthermophilen Archaeen sowie Genomanalyse und molekularbiologische Untersuchungen von Nanoarchaeum equitans. PhD, Universität Regensburg.