Bibliography of the Universität Regensburg

Watzlowik, Maria Theresia, Silberhorn, Elisabeth, Das, Sujaan , Singhal, Ritwik, Venugopal, Kannan, Holzinger, Simon , Stokes, Barbara, Schadt, Ella, Sollelis, Lauriane, Bonnell, Victoria A., Gow, Matthew, Klingl, Andreas, Marti, Matthias, Llinás, Manuel, Meissner, Markus and Längst, Gernot (2025) Plasmodium blood stage development requires the chromatin remodeller Snf2L. Nature.

Medenbach, Jan and Tschochner, Herbert (2023) Nobel Prize for physiology or medicine in 2023: how to dupe the cellular innate immune system using modified RNA for therapeutic treatment. Pflügers Archiv - European Journal of Physiology 476, pp. 5-6.

Pöll, Gisela, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2023) Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. PLOS ONE 18 (3), e0283698.

Esser, Sarah P. , Rahlff, Janina , Zhao, Weishu, Predl, Michael , Plewka, Julia , Sures, Katharina , Wimmer, Franziska, Lee, Janey, Adam, Panagiotis S., McGonigle, Julia, Turzynski, Victoria, Banas, Indra, Schwank, Katrin, Krupovic, Mart, Bornemann, Till L. V., Figueroa-Gonzalez, Perla Abigail, Jarett, Jessica, Rattei, Thomas , Amano, Yuki, Blaby, Ian K., Cheng, Jan-Fang, Brazelton, William J., Beisel, Chase L. , Woyke, Tanja, Zhang, Ying and Probst, Alexander J. (2023) A predicted CRISPR-mediated symbiosis between uncultivated archaea. Nature Microbiology 8 (9), pp. 1619-1633. Fulltext not available.

Schwank, Katrin, Schmid, Catharina, Fremter, Tobias, Engel, Christoph , Milkereit, Philipp , Griesenbeck, Joachim and Tschochner, Herbert (2023) Features of yeast RNA polymerase I with special consideration of the lobe binding subunits. Biological Chemistry 404 (11-12), pp. 979-1002. Fulltext not available.

Tschochner, Herbert (2023) Highlight: how to synthesize, assemble and regulate ribonucleoprotein-complexes. Biological Chemistry 404 (11-12), p. 977. Fulltext not available.

Daiß, Julia L. , Griesenbeck, Joachim , Tschochner, Herbert and Engel, Christoph (2023) Synthesis of the ribosomal RNA precursor in human cells: mechanisms, factors and regulation. Biological Chemistry 404 (11-12), pp. 1003-1023. Fulltext not available.

Pilsl, Michael, Tschochner, Herbert, Griesenbeck, Joachim and Engel, Christoph (2022) RNA-Polymerase I: einer spezialisierten Transkriptionsmaschine auf der Spur. BIOspektrum 28 (5), pp. 484-487.

Schwank, Katrin, Schmid, Catharina, Fremter, Tobias, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2022) RNA polymerase I (Pol I) lobe-binding subunit Rpa12.2 promotes RNA cleavage and proofreading. Journal of Biological Chemistry 298 (5), p. 101862. Fulltext not available.

Preiss, Thomas, Pöll, Gisela, Pilsl, Michael, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2021) Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. PLOS ONE 16 (11), e0252497.

Merkl, Philipp E., Pilsl, Michael, Fremter, Tobias, Schwank, Katrin, Engel, Christoph , Längst, Gernot, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2020) RNA polymerase I (Pol I) passage through nucleosomes depends on Pol I subunits binding its lobe structure. Journal of Biological Chemistry 295 (15), pp. 4782-4795. Fulltext not available.

Schulze, Stefan , Adams, Zachary , Cerletti, Micaela, De Castro, Rosana, Ferreira-Cerca, Sébastien , Fufezan, Christian, Giménez, María Inés, Hippler, Michael, Jevtic, Zivojin , Knüppel, Robert, Legerme, Georgio, Lenz, Christof, Marchfelder, Anita, Maupin-Furlow, Julie , Paggi, Roberto A. , Pfeiffer, Friedhelm , Poetsch, Ansgar , Urlaub, Henning and Pohlschroder, Mechthild (2020) The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. Nature Communications 11 (1). Fulltext not available.

Hannig, Katharina, Babl, Virginia, Hergert, Kristin, Maier, Andreas, Pilsl, Michael, Schächner, Christopher, Stöckl, Ulrike, Milkereit, Philipp, Tschochner, Herbert, Seufert, Wolfgang and Griesenbeck, Joachim (2019) The C-terminal region of Net1 is an activator of RNA polymerase I transcription with conserved features from yeast to human. PLOS Genetics 15 (2), e1008006.

Linnemann, Jan, Pöll, Gisela, Jakob, Steffen, Ferreira-Cerca, Sébastien , Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2019) Impact of two neighbouring ribosomal protein clusters on biogenesis factor binding and assembly of yeast late small ribosomal subunit precursors. PLOS ONE 14 (1), e0203415.

McStay, Brian , Darrière, Tommy, Pilsl, Michael, Sarthou, Marie-Kerguelen, Chauvier, Adrien, Genty, Titouan , Audibert, Sylvain, Dez, Christophe, Léger-Silvestre, Isabelle , Normand, Christophe, Henras, Anthony K., Kwapisz, Marta , Calvo, Olga , Fernández-Tornero, Carlos, Tschochner, Herbert and Gadal, Olivier (2019) Genetic analyses led to the discovery of a super-active mutant of the RNA polymerase I. PLOS Genetics 15 (5), e1008157. Fulltext not available.

Boissier, Fanny, Schmidt, Christina Maria, Linnemann, Jan, Fribourg, Sébastien and Perez-Fernandez, Jorge (2017) Pwp2 mediates UTP-B assembly via two structurally independent domains. Scientific Reports 7 (1). Fulltext not available.

Milkereit, Philipp, Pöll, Gisela, Müller, Christian, Bodden, Malena, Teubl, Fabian, Eichner, Norbert, Lehmann, Gerhard, Griesenbeck, Joachim and Tschochner, Herbert (2017) Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae. PLOS ONE 12 (7), e0179405.

Lauinger, Linda, Li, Jing, Shostak, Anton, Cemel, Ibrahim Avi, Ha, Nati, Zhang, Yaru, Merkl, Philipp E., Obermeyer, Simon, Stankovic-Valentin, Nicolas, Schafmeier, Tobias, Wever, Walter J., Bowers, Albert A., Carter, Kyle P., Palmer, Amy E., Tschochner, Herbert, Melchior, Frauke , Deshaies, Raymond J. , Brunner, Michael and Diernfellner, Axel (2017) Thiolutin is a zinc chelator that inhibits the Rpn11 and other JAMM metalloproteases. Nature Chemical Biology 13 (7), pp. 709-714. Fulltext not available.

Milkereit, Philipp, Griesenbeck, Joachim, Tschochner, Herbert , Ohmayer, Uli, Gil-Hernández, Álvaro, Sauert, Martina, Martín-Marcos, Pilar and Tamame, Mercedes (2015) Studies on the Coordination of Ribosomal Protein Assembly Events Involved in Prosessing and Stabiliz. PLoS ONE 10 (12), e0143768.

Ohmayer, Uli, Gamalinda, Michael, Sauert, Martina , Ossowski, Julius, Pöll, Gisela, Linnemann, Jan, Hierlmeier, Thomas, Perez-Fernandez, Jorge , Kumcuoglu, Beril, Leger-Silvestre, Isabelle, Faubladier, Marlène, Griesenbeck, Joachim , Woolford, John , Tschochner, Herbert and Milkereit, Philipp (2013) Studies on the Assembly Characteristics of Large Subunit Ribosomal Proteins in S. cerevisae. PloS one 8 (7), e68412.

Hierlmeier, Thomas, Merl, Juliane, Sauert, Martina , Perez-Fernandez, Jorge , Schultz, Patrick, Bruckmann, Astrid, Hamperl, Stephan , Ohmayer, Uli, Rachel, Reinhard, Jacob, Anja, Hergert, Kristin, Deutzmann, Rainer, Griesenbeck, Joachim , Hurt, Ed, Milkereit, Philipp, Baßler, Jochen and Tschochner, Herbert (2012) Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae. Nucleic acids research 41 (2), pp. 1191-1210.

Ohmayer, Uli, Perez-Fernandez, Jorge, Hierlmeier, Thomas, Pöll, Gisela, Williams, Lydia, Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2012) Local Tertiary Structure Probing of Ribonucleoprotein Particles by Nuclease Fusion Proteins. Plos One 7, e42449.

Jakob, Steffen, Ohmayer, Uli, Neueder, Andreas , Hierlmeier, Thomas, Perez-Fernandez, Jorge , Hochmuth, Eduard, Deutzmann, Rainer, Griesenbeck, Joachim , Tschochner, Herbert and Milkereit, Philipp (2012) Interrelationships between Yeast Ribosomal Protein Assembly Events and Transient Ribosome Biogenesis Factors Interactions in Early Pre-Ribosomes. PloS one 7 (3), e32552.

Wieden, Hans-Joachim, Ohmayer, Uli , Perez-Fernandez, Jorge, Hierlmeier, Thomas, Pöll, Gisela, Williams, Lydia , Griesenbeck, Joachim, Tschochner, Herbert and Milkereit, Philipp (2012) Local Tertiary Structure Probing of Ribonucleoprotein Particles by Nuclease Fusion Proteins. PLoS ONE 7 (8), e42449. Fulltext not available.

Reiter, Alarich, Hamperl, Stephan , Seitz, Hannah, Merkl, Philipp, Perez-Fernandez, Jorge , Williams, Lydia, Gerber, Jochen, Németh, Attila, Léger, Isabelle, Gadal, Olivier , Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast. The EMBO Journal 31 (16), pp. 3480-3493. Fulltext not available.

Wittner, Manuel, Hamperl, Stephan , Stöckl, Ulrike, Seufert, Wolfgang , Tschochner, Herbert, Milkereit, Philipp and Griesenbeck, Joachim (2011) Establishment and Maintenance of Alternative Chromatin States at a Multicopy Gene Locus. Cell 145 (4), pp. 543-554. Fulltext not available.

Reiter, Alarich, Steinbauer, Robert, Philippi, Anja, Gerber, Jochen, Tschochner, Herbert, Milkereit, Philipp and Griesenbeck, Joachim (2011) Reduction in Ribosomal Protein Synthesis Is Sufficient To Explain Major Effects on Ribosome Production after Short-Term TOR Inactivation in Saccharomyces cerevisiae. Molecular and Cellular Biology 31 (4), pp. 803-817. Fulltext not available.

Spirin, Alexander S. , Neueder, Andreas, Jakob, Steffen, Pöll, Gisela, Linnemann, Jan, Deutzmann, Rainer, Tschochner, Herbert and Milkereit, Philipp (2010) A Local Role for the Small Ribosomal Subunit Primary Binder rpS5 in Final 18S rRNA Processing in Yeast. PLoS ONE 5 (4), e10194. Fulltext not available.

Merl, Juliane, Jakob, Steffen, Ridinger, Katrin, Hierlmeier, Thomas, Deutzmann, Rainer, Milkereit, Philipp and Tschochner, Herbert (2010) Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes. Nucleic Acids Research 38 (9), pp. 3068-3080. Fulltext not available.

Philippi, Anja, Steinbauer, Robert, Reiter, Alarich, Fath, Stephan, Leger-Silvestre, Isabelle, Milkereit, Philipp, Griesenbeck, Joachim and Tschochner, Herbert (2010) TOR-dependent reduction in the expression level of Rrn3p lowers the activity of the yeast RNA Pol I machinery, but does not account for the strong inhibition of rRNA production. Nucleic Acids Research 38 (16), pp. 5315-5326. Fulltext not available.

Clemente-Blanco, Andrés, Mayán-Santos, María, Schneider, David A. , Machín, Félix , Jarmuz, Adam, Tschochner, Herbert and Aragón, Luis (2009) Cdc14 inhibits transcription by RNA polymerase I during anaphase. Nature 458 (7235), pp. 219-222. Fulltext not available.

Tora, Laszlo, Kühn, Holger, Hierlmeier, Thomas, Merl, Juliane, Jakob, Steffen, Aguissa-Touré, Almass-Houd, Milkereit, Philipp and Tschochner, Herbert (2009) The Noc-Domain Containing C-Terminus of Noc4p Mediates Both Formation of the Noc4p-Nop14p Submodule and Its Incorporation into the SSU Processome. PLoS ONE 4 (12), e8370. Fulltext not available.

Reich, Christoph, Zeller, Mirijam, Milkereit, Philipp, Hausner, Winfried, Cramer, Patrick, Tschochner, Herbert and Thomm, Michael (2009) The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro. Molecular Microbiology 71 (4), pp. 989-1002. Fulltext not available.

Ferreira-Cerca, Sébastien , Pöll, Gisela, Kühn, Holger, Neueder, Andreas , Jakob, Steffen, Tschochner, Herbert and Milkereit, Philipp (2007) Analysis of the In Vivo Assembly Pathway of Eukaryotic 40S Ribosomal Proteins. Molecular Cell 28 (3), pp. 446-457. Fulltext not available.

Kuhn, Claus-D., Geiger, Sebastian R., Baumli, Sonja, Gartmann, Marco, Gerber, Jochen, Jennebach, Stefan, Mielke, Thorsten, Tschochner, Herbert, Beckmann, Roland and Cramer, Patrick (2007) Functional Architecture of RNA Polymerase I. Cell 131 (7), pp. 1260-1272. Fulltext not available.

Gerber, Jochen, Reiter, Alarich, Steinbauer, Robert, Jakob, Steffen, Kuhn, Claus-Dieter, Cramer, Patrick, Griesenbeck, Joachim , Milkereit, Philipp and Tschochner, Herbert (2007) Site specific phosphorylation of yeast RNA polymerase I. Nucleic Acids Research 36 (3), pp. 793-802. Fulltext not available.

Ferreira-Cerca, Sébastien , Pöll, Gisela, Gleizes, Pierre-Emmanuel , Tschochner, Herbert and Milkereit, Philipp (2005) Roles of Eukaryotic Ribosomal Proteins in Maturation and Transport of Pre-18S rRNA and Ribosome Function. Molecular Cell 20 (2), pp. 263-275. Fulltext not available.

Fath, Stephan, Kobor, Michael S. , Philippi, Anja, Greenblatt, Jack and Tschochner, Herbert (2004) Dephosphorylation of RNA Polymerase I by Fcp1p Is Required for Efficient rRNA Synthesis. Journal of Biological Chemistry 279 (24), pp. 25251-25259. Fulltext not available.

Bier, Mirko, Fath, Stephan and Tschochner, Herbert (2004) The composition of the RNA polymerase I transcription machinery switches from initiation to elongation mode. FEBS Letters 564 (1-2), pp. 41-46. Fulltext not available.

Pilsl, Michael (2022) Reconstitution of the RNA polymerase I initiation complex from recombinant initiation factors and regulation of its activity. PhD, Universität Regensburg.

Knüppel, Robert Michael (2021) Small changes, unexpected consequences: Molecular insights into substrate-dependent adaptation of KsgA/Dim1-dependent ribosomal RNA modifications in archaea. PhD, Universität Regensburg.

Ohmayer, Uli (2015) Studies on the assembly process of large subunit ribosomal proteins in S.cerevisiae. PhD, Universität Regensburg.

Merkl, Philipp (2014) Comparative studies on elongation and termination of the three RNA polymerases from S. cerevisiae in vitro. PhD, Universität Regensburg.

Hierlmeier, Thomas (2013) Characterisation of the Rrp5p/Noc1p/Noc2p protein complex and its function in ribosome biogenesis of Saccharomyces cerevisiae. PhD, Universität Regensburg.

Reiter, Alarich (2011) In vivo analysis of RNA polymerase I elongation and termination in Saccharomyces cerevisiae. PhD, Universität Regensburg.

Neueder, Andreas (2011) Characterization of r-protein variants in Saccharomyces cerevisiae. PhD, Universität Regensburg.

Steinbauer, Robert (2011) Growth-dependent regulation of ribosome biogenesis and the role of Rrn3p in RNA polymerase I transcription. PhD, Universität Regensburg.

Jakob, Steffen (2011) Analysis of the relationship between ribosomal protein and SSU processome assembly in Saccharomyces cerevisiae. PhD, Universität Regensburg.

Klug, Maja (2010) Dynamics of DNA methylation in differentiating hematopoietic cells. PhD, Universität Regensburg.

Asbach, Benedikt (2010) Charakterisierung der Interaktion von Sam68 mit SH3-Domänen – Implikationen für die HIV-Replikation. PhD, Universität Regensburg.

Götze, Hannah (2010) Function of the upstream activating factor in chromatin structure organization and transcriptional regulation at the yeast ribosomal DNA. PhD, Universität Regensburg.

Merl, Juliane (2010) In-vivo- und In-vitro-Charakterisierung von Proteinkomplexen eukaryotischer Ribosomenbiogenesefaktoren. PhD, Universität Regensburg.

Berger, Axel B. (2010) Quantitative and functional analysis of chromosome dynamics: Influence of the nucleolus on the regulation of gene expression. PhD, Universität Regensburg.

Merz, Katharina (2008) In vivo Analyse der Chromatinstruktur ribosomaler DNA in S. cerevisiae. PhD, Universität Regensburg.

Gerber, Jochen (2008) Site-specific phosphorylation of yeast RNA polymerase I. PhD, Universität Regensburg.

Ferreira-Cerca, Sébastien (2008) Analysis of the in vivo functions and assembly pathway of small subunit ribosomal proteins in Saccharomyces cerevisiae. PhD, Universität Regensburg.

Philippi, Anja (2008) Untersuchungen zur Rolle des Transkriptionsfaktors Rrn3p in der wachstumsabhängigen Regulation der rRNA-Synthese. PhD, Universität Regensburg.

Kühn, Holger (2007) Funktionelle Charakterisierung von Noc4p-Interaktionen in der Ribosomenbiogenese. PhD, Universität Regensburg.

Barabas, Sascha (2007) Immunologische Mechanismen des Harnstoff-vermittelten Proteintransfers in antigenpräsentierende Zellen und dessen Bedeutung für den Nachweis antigenspezifischer T-Zellen und ihrer Zielstrukturen. PhD, Universität Regensburg.