Bibliography of the Universität Regensburg

Meindl, Andreas, Romberger, Markus, Lehmann, Gerhard, Eichner, Norbert, Kleemann, Leon, Wu, Jie, Danner, Johannes, Boesl, Maria, Mesitov, Mikhail, Meister, Gunter , König, Julian, Leidel, Sebastian Andreas and Medenbach, Jan (2023) A rapid protocol for ribosome profiling of low input samples. Nucleic Acids Research 51 (13), e68-e68.

Markusch, Hanna, Michl‐Holzinger, Philipp, Obermeyer, Simon, Thorbecke, Claudia, Bruckmann, Astrid , Babl, Sabrina, Längst, Gernot , Osakabe, Akihisa, Berger, Frédéric and Grasser, Klaus D. (2023) Elongation factor 1 is a component of the Arabidopsis RNA polymerase II elongation complex and associates with a subset of transcribed genes. New Phytologist 238 (1), pp. 113-124.

Magnus, Clara Luzia, Hiergeist, Andreas , Schuster, Philipp, Rohrhofer, Anette, Medenbach, Jan , Gessner, André , Peterhoff, David and Schmidt, Barbara (2022) Targeted escape of SARS-CoV-2 in vitro from monoclonal antibody S309, the precursor of sotrovimab. Frontiers in Immunology 13, p. 966236.

De La Cruz Thea, Benjamín Isaías (2022) Study of smooth muscle cell differentiation mediated by epigenetic mechanisms. PhD, Universität Regensburg.

Miksys, Algirdas, Fu, Lifei, Madej, M. Gregor , Guerreiro, Duarte N., Kaltwasser, Susann, Conway, Maria, Ejder, Sema, Bruckmann, Astrid , Marles-Wright, Jon, Lewis, Richard J., O’Byrne, Conor, Pané-Farré, Jan and Ziegler, Christine (2022) Molecular insights into intra-complex signal transmission during stressosome activation. Communications Biology 5, art.no.621.

Salerno-Kochan, Anna , Horn, Andreas, Ghosh, Pritha, Nithin, Chandran , Kościelniak, Anna, Meindl, Andreas, Strauss, Daniela, Krutyhołowa, Rościsław , Rossbach, Oliver , Bujnicki, Janusz M, Gaik, Monika , Medenbach, Jan and Glatt, Sebastian (2022) Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26. Life Science Alliance 5 (8), e202201418.

Michl-Holzinger, Philipp, Obermeyer, Simon, Markusch, Hanna, Pfab, Alexander, Ettner, Andreas, Bruckmann, Astrid , Babl, Sabrina, Längst, Gernot , Schwartz, Uwe , Tvardovskiy, Andrey, Jensen, Ole N., Osakabe, Akihisa, Berger, Frédéric and Grasser, Klaus D. (2022) Phosphorylation of the FACT histone chaperone subunit SPT16 affects chromatin at RNA polymerase II transcriptional start sites in Arabidopsis. Nucleic Acids Research 50 (9), pp. 5014-5028.

Horn, Andreas (2021) Charakterisierung der transienten Repression von nanos in der frühen Oogenese von Drosophila melanogaster. PhD, Universität Regensburg.

Royer, Melanie (2021) Septal coding and non-coding RNAs regulated in social fear - The role of lncRNA Meg3 in social fear extinction. PhD, Universität Regensburg.

Ho-Xuan, Hung , Lehmann, Gerhard, Glazar, Petar, Gypas, Foivos, Eichner, Norbert, Heizler, Kevin, Schlitt, Hans J. , Zavolan, Mihaela, Rajewsky, Nikolaus, Meister, Gunter and Hackl, Christina (2020) Gene Expression Signatures of a Preclinical Mouse Model during Colorectal Cancer Progression under Low-Dose Metronomic Chemotherapy. Cancers 13 (1), p. 49.

Reich, Stefan, Nguyen, Chi D. L., Has, Canan, Steltgens, Sascha, Soni, Himanshu, Coman, Cristina, Freyberg, Moritz, Bichler, Anna, Seifert, Nicole , Conrad, Dominik, Knobbe-Thomsen, Christiane B. , Tews, Björn, Toedt, Grischa, Ahrends, Robert and Medenbach, Jan (2020) A multi-omics analysis reveals the unfolded protein response regulon and stress-induced resistance to folate-based antimetabolites. Nature Communications 11 (2936), pp. 1-15.

Feder, Susanne, Bruckmann, Astrid, McMullen, Nichole, Sinal, Christopher J. and Buechler, Christa (2020) Chemerin Isoform-Specific Effects on Hepatocyte Migration and Immune Cell Inflammation. International Journal of Molecular Sciences 21 (19), p. 7205. Fulltext not available.

Graf, Johannes and Kretz, Markus (2020) From structure to function: route to understanding lncRNA mechanism. BioEssays 42, p. 2000027.

Kopczynski, Dominik , Hentschel, Andreas, Coman, Cristina , Schebb, Nils Helge, Hornemann, Thorsten, Mashek, Douglas G., Hartung, Nicole M., Shevchuk, Olga, Schött, Hans-Frieder, Lorenz, Kristina, Torta, Federico, Burla, Bo, Zahedi, René P. , Sickmann, Albert, Kreutz, Michael R., Ejsing, Christer S. , Medenbach, Jan and Ahrends, Robert (2020) Simple Targeted Assays for Metabolic Pathways and Signaling: A Powerful Tool for Targeted Proteomics. Analytical Chemistry 92 (20), pp. 13672-13676. Fulltext not available.

Ahrends, Robert and Medenbach, Jan (2020) Stress macht Zellen resistent gegen Folsäure-basierte Chemotherapeutika. Biospektrum 26, pp. 609-611.

Herdt, Olga, Reich, Stefan, Medenbach, Jan , Timmermann, Bernd, Olofsson, Didrik, Preußner, Marco and Heyd, Florian (2020) The zinc finger domains in U2AF26 and U2AF35 have diverse functionalities including a role in controlling translation. RNA Biology 17 (6), pp. 843-856. Fulltext not available.

Weichmann, Franziska, Hett, Robert, Schepers, Aloys, Ito-Kureha, Taku, Flatley, Andrew, Slama, Kaouthar, Hastert, Florian D., Angstman, Nicholas B., Cardoso, M. Cristina, König, Julian, Hüttelmaier, Stefan, Dieterich, Christoph, Canzar, Stefan, Helm, Mark, Heissmeyer, Vigo, Feederle, Regina and Meister, Gunter (2020) Validation strategies for antibodies targeting modified ribonucleotides. RNA 26 (10), pp. 1489-1506. Fulltext not available.

Lim, Clarice X., Lee, Bernett, Geiger, Olivia, Passegger, Christina, Beitzinger, Michaela, Romberger, Johann, Stracke, Anika, Högenauer, Christoph, Stift, Anton, Stoiber, Heribert, Poidinger, Michael, Zebisch, Armin , Meister, Gunter, Williams, Adam, Flavell, Richard A., Henao-Mejia, Jorge and Strobl, Herbert (2020) miR-181a Modulation of ERK-MAPK Signaling Sustains DC-SIGN Expression and Limits Activation of Monocyte-Derived Dendritic Cells. Cell Reports 30 (11), 3793-3805.e5. Fulltext not available.

Haberl, Elisabeth M., Pohl, Rebekka, Rein-Fischboeck, Lisa, Feder, Susanne, Bruckmann, Astrid, Höring, Marcus , Krautbauer, Sabrina, Liebisch, Gerhard, Buechler, Christa and , (2019) Overexpression of Hepatocyte Chemerin-156 Lowers Tumor Burden in a Murine Model of Diethylnitrosamine-Induced Hepatocellular Carcinoma. International Journal of Molecular Sciences 21 (1), p. 252.

Rohweder, Bettina, Lehmann, Gerhard, Eichner, Norbert, Polen, T., Rajendran, Chitra, Ruperti, Fabian , Linde, Mona, Treiber, Thomas, Jung, Oona, Dettmer, Katja, Meister, Gunter, Bott, M. , Gronwald, Wolfram and Sterner, Reinhard (2019) Library Selection with a Randomized Repertoire of (βα)8-Barrel Enzymes Results in Unexpected Induction of Gene Expression. Biochemistry 58 (41), pp. 4207-4217. Fulltext not available.

Ziegler, Christian (2019) Functional characterization of SPRR5 in neoplasia and epidermal homeostasis. PhD, Universität Regensburg.

Widbiller, Matthias , Schweikl, Helmut, Bruckmann, Astrid, Rosendahl, Andreas, Hochmuth, Eduard, Lindner, Sophia R., Buchalla, Wolfgang and Galler, Kerstin M. (2019) Shotgun Proteomics of Human Dentin with Different Prefractionation Methods. Scientific Reports 9 (4457), pp. 1-8.

Moschall, Rebecca (2019) Regulation of translation and alternative splicing by the Drosophila RNA-binding protein Sister-of-Sex-lethal. PhD, Universität Regensburg.

Nguyen, Chi D. L., Malchow, Sebastian, Reich, Stefan, Steltgens, Sascha, Shuvaev, Konstantin V., Loroch, Stefan, Lorenz, Christin, Sickmann, Albert , Knobbe-Thomsen, Christiane B. , Tews, Björn, Medenbach, Jan and Ahrends, Robert (2019) A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells. Scientific Reports 9 (1). Fulltext not available.

Semmelmann, Florian, Kabeya, Naoki , Malcicka, Miriama, Bruckmann, Astrid, Broschwitz, Bastian, Straub, Kristina, Merkl, Rainer, Monroig, Oscar, Sterner, Reinhard, Ruther, Joachim and Ellers, Jacintha (2019) Functional characterisation of two Δ12-desaturases demonstrates targeted production of linoleic acid as pheromone precursor in Nasonia. Journal of Experimental Biology. Fulltext not available.

Reichelt-Wurm, Simone, Wirtz, Tobias, Chittka, Dominik, Lindenmeyer, Maja, Reichelt, Robert M., Beck, Sebastian, Politis, Panagiotis, Charonis, Aristidis, Kretz, Markus, Huber, Tobias B., Liu, Shuya, Banas, Bernhard and Banas, Miriam C. (2019) Glomerular expression pattern of long non-coding RNAs in the type 2 diabetes mellitus BTBR mouse model. Scientific Reports 9 (1). Fulltext not available.

Urdaneta, Erika C. , Vieira-Vieira, Carlos H., Hick, Timon, Wessels, Hans-Herrmann, Figini, Davide, Moschall, Rebecca , Medenbach, Jan , Ohler, Uwe , Granneman, Sander , Selbach, Matthias and Beckmann, Benedikt M. (2019) Purification of cross-linked RNA-protein complexes by phenol-toluol extraction. Nature Communications 10 (1). Fulltext not available.

Weiss, Kerstin, Treiber, Thomas, Meister, Gunter and Schratt, Gerhard (2019) The nuclear matrix protein Matr3 regulates processing of the synaptic microRNA-138-5p. Neurobiology of Learning and Memory 159, pp. 36-45. Fulltext not available.

Moschall, Rebecca , Rass, Mathias, Rossbach, Oliver , Lehmann, Gerhard, Kullmann, Lars, Eichner, Norbert, Strauss, Daniela, Meister, Gunter, Schneuwly, Stephan, Krahn, Michael P. and Medenbach, Jan (2018) Drosophila Sister-of-Sex-lethal reinforces a male-specific gene expression pattern by controlling Sex-lethal alternative splicing. Nucleic Acids Research 2018 (1), pp. 1-13.

Ho Xuan, Hung (2018) Investigation of the roles of circular RNA circZNF609 during colorectal cancer progression. PhD, Universität Regensburg.

Schöller, Eva, Weichmann, Franziska, Treiber, Thomas, Ringle, Sam, Treiber, Nora, Flatley, Andrew, Feederle, Regina, Bruckmann, Astrid and Meister, Gunter (2018) Interactions, localization, and phosphorylation of the m6A generating METTL3–METTL14–WTAP complex. RNA 24 (4), pp. 499-512. Fulltext not available.

Holinski, Alexandra, Heyn, Kristina, Merkl, Rainer and Sterner, Reinhard (2017) Combining ancestral sequence reconstruction with protein design to identify an interface hotspot in a key metabolic enzyme complex. Proteins: Structure, Function, and Bioinformatics 85 (2), pp. 312-321. Fulltext not available.

Moschall, Rebecca , Strauss, Daniela, García-Beyaert, Marina, Gebauer, Fátima and Medenbach, Jan (2017) Drosophila Sister-of-Sex-lethal is a repressor of translation. RNA 24 (2), pp. 149-158. Fulltext not available.

Antosz, Wojciech, Pfab, Alexander, Ehrnsberger, Hans F., Holzinger, Philipp, Köllen, Karin, Mortensen, Simon A. , Bruckmann, Astrid, Schubert, Thomas , Längst, Gernot, Griesenbeck, Joachim , Schubert, Veit , Grasser, Marion and Grasser, Klaus D. (2017) The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors. The Plant Cell 29 (4), pp. 854-870. Fulltext not available.

Wells, Graeme R., Weichmann, Franziska, Sloan, Katherine E., Colvin, David, Watkins, Nicholas J. and Schneider, Claudia (2017) The ribosome biogenesis factor yUtp23/hUTP23 coordinates key interactions in the yeast and human pre-40S particle and hUTP23 contains an essential PIN domain. Nucleic Acids Research, gkw1344. Fulltext not available.

Strieder, Nicholas (2016) Analysis of Argonaute-Chromatin Interactions in Human Somatic Cells. PhD, Universität Regensburg.

Wankerl, Ludwig (2016) Characterization of CAMTA1 and Nkx2.2 in the context of glioblastoma cancer stem cell biology. PhD, Universität Regensburg.

Aigner, Achim, Buesen, Roland, Gant, Tim, Gooderham, Nigel, Greim, Helmut, Hackermüller, Jörg , Hubesch, Bruno, Laffont, Madeleine, Marczylo, Emma, Meister, Gunter, Petrick, Jay S., Rasoulpour, Reza J., Sauer, Ursula G., Schmidt, Kerstin, Seitz, Hervé, Slack, Frank, Sukata, Tokuo, van der Vies, Saskia M., Verhaert, Jan, Witwer, Kenneth W. and Poole, Alan (2016) Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop. Regulatory Toxicology and Pharmacology 82, pp. 127-139. Fulltext not available.

Schneider, Tim, Hung, Lee-Hsueh, Schreiner, Silke, Starke, Stefan, Eckhof, Heinrich, Rossbach, Oliver, Reich, Stefan, Medenbach, Jan and Bindereif, Albrecht (2016) CircRNA-protein complexes: IMP3 protein component defines subfamily of circRNPs. Scientific Reports 6 (1). Fulltext not available.

Chen, Yung-Chia Ariel, Stuwe, Evelyn, Luo, Yicheng, Ninova, Maria , Le Thomas, Adrien, Rozhavskaya, Ekaterina, Li, Sisi, Vempati, Sivani, Laver, John D., Patel, Dinshaw J., Smibert, Craig A., Lipshitz, Howard D., Fejes Toth, Katalin and Aravin, Alexei A. (2016) Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors. Molecular Cell 63 (1), pp. 97-109. Fulltext not available.

Reinders, Y., Völler, D., Bosserhoff, Anja-Katrin, Oefner, Peter and Reinders, Jörg (2016) Testing Suitability of Cell Cultures for SILAC-Experiments Using SWATH-Mass Spectrometry. Methods Mol Biol 1394, pp. 101-108. Fulltext not available.

Hasler, Daniele, Lehmann, Gerhard, Murakawa, Yasuhiro, Klironomos, Filippos, Jakob, Leonhard, Grässer, Friedrich A., Rajewsky, Nikolaus, Landthaler, Markus and Meister, Gunter (2016) The Lupus Autoantigen La Prevents Mis-channeling of tRNA Fragments into the Human MicroRNA Pathway. Molecular Cell 63 (1), pp. 110-124. Fulltext not available.

Wells, Graeme R., Weichmann, Franziska, Colvin, David, Sloan, Katherine E., Kudla, Grzegorz , Tollervey, David , Watkins, Nicholas J. and Schneider, Claudia (2016) The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans. Nucleic Acids Research 44 (11), pp. 5399-5409. Fulltext not available.

Arribas-Hernández, Laura , Marchais, Antonin , Poulsen, Christian, Haase, Bettina, Hauptmann, Judith, Benes, Vladimir, Meister, Gunter and Brodersen, Peter (2016) The Slicer Activity of ARGONAUTE1 is Required Specifically for the Phasing, Not Production, of Trans-Acting Short Interfering RNAs in Arabidopsis. The Plant Cell, tpc.00121.2016. Fulltext not available.

Meister, Gunter, Schindler, Susann G., Danner, Johannes, Kremmer, Elisabeth, Pfaff, Janina, Hannus, Stefan, Depping, Reinhard and Schraivogel, Daniel (2015) Importin-β facilitates nuclear import of human GW proteins and balances cytoplasmic gene silencing protein levels. Nucleic Acids Research 2015, pp. 1-15.

Dueck, Anne (2015) Analysis of small RNA-Argonaute complexes in different organisms. PhD, Universität Regensburg.

Demir, Fatih, Horntrich, Claudia, Blachutzik, Jörg O., Scherzer, Sönke, Reinders, Yvonne, Kierszniowska, Sylwia, Schulze, Waltraud X., Harms, Gregory S., Hedrich, Rainer, Geiger, Dietmar and Kreuzer, Ines (2013) Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. Proceedings of the National Academy of Sciences of the United States of America 110 (20), pp. 8296-82301.

Dueck, Anne, Ziegler, Christian, Eichner, Alexander, Berezikov, Eugene and Meister, Gunter (2012) microRNAs associated with the different human Argonaute proteins. Nucleic Acids Research 40 (19), pp. 9850-9862.