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Vayssières, Marlène, Jüttner, Michael, Haas, Karina, Ancelin, Aurélie, Marchfelder, Anita, Leulliot, Nicolas, Ferreira-Cerca, Sébastien
and Blaud, Magali
(2024)
RNase W, a conserved ribonuclease family with a novel active site.
Nucleic Acids Research.
Babl, Virginia-Lorena, Girke, Philipp, Kruse, Sebastian, Pinz, Sophia Charlotte
, Hannig, Katharina, Schächner, Christopher, Hergert, Kristin, Wittner, Manuel, Seufert, Wolfgang
, Milkereit, Philipp
, Tschochner, Herbert and Griesenbeck, Joachim
(2024)
Establishment of closed 35S ribosomal RNA gene chromatin in stationary Saccharomyces cerevisiae cells.
Nucleic Acids Research.
Breindl, Matthias, Spitzer, Dominika, Gerasimaitė, Rūta, Kairys, Visvaldas, Schubert, Thomas, Henfling, Ramona, Schwartz, Uwe
, Lukinavičius, Gražvydas and Manelytė, Laura
(2023)
Biochemical and cellular insights into the Baz2B protein, a non-catalytic subunit of the chromatin remodeling complex.
Nucleic Acids Research 52 (1), pp. 337-55165.
Grünberger, Felix
, Jüttner, Michael, Knüppel, Robert Michael, Ferreira-Cerca, Sébastien
and Grohmann, Dina
(2023)
Nanopore-based RNA sequencing deciphers the formation, processing, and modification steps of rRNA intermediates in archaea.
RNA 29 (8), pp. 1255-1273.
, Llamazares Prada, Maria, Pohl, Stephanie T
, Richter, Mandy, Tamas, Raluca, Schuler, Michael, Keller, Corinna, Mijosek, Vedrana, Muley, Thomas
, Schneider, Marc A
, Quast, Karsten, Hey, Joschka
, Heußel, Claus P, Warth, Arne, Winter, Hauke, Serçin, Özdemirhan, Karmouty‐Quintana, Harry, Jyothula, Soma SK, Patel, Manish K, Herth, Felix
, Koch, Ina, Petrosino, Giuseppe, Titimeaua, Alexandru, Mardin, Balca R, Weichenhan, Dieter, Jurkowski, Tomasz P, Imbusch, Charles D, Brors, Benedikt, Benes, Vladimir, Jung, Birgit, Wyatt, David, Stahl, Heiko F, Plass, Christoph and Jurkowska, Renata Z
(2023)
High‐resolution transcriptomic and epigenetic profiling identifies novel regulators of COPD.
The EMBO Journal 42 (12).
Fulltext not available.
, Perez-Fernandez, Jorge
and de la Cruz, Jesús
(2023)
The Role of Ribosomal Proteins eL15 and eL36 in the Early Steps of Yeast 60S Ribosomal Subunit Assembly.
Journal of Molecular Biology 435 (24), p. 168321.
Fulltext not available.
Jüttner, Michael and Ferreira-Cerca, Sébastien
(2022)
Ribosomenbiogenese in Archaeen.
BIOspektrum 28 (5), pp. 478-480.
Tomkuvienė, Miglė, Meier, Markus, Ikasalaitė, Diana, Wildenauer, Julia, Kairys, Visvaldas
, Klimašauskas, Saulius
and Manelyte, Laura
(2022)
Enhanced nucleosome assembly at CpG sites containing an extended 5-methylcytosine analogue.
Nucleic Acids Research 50 (11), pp. 6549-6561.
and Battistuzzi, Fabia Ursula
(2022)
Looking through the Lens of the Ribosome Biogenesis Evolutionary History: Possible Implications for Archaeal Phylogeny and Eukaryogenesis.
Molecular Biology and Evolution 39 (4).
Fulltext not available.
(2022)
The dark side of the ribosome life cycle.
RNA Biology 19 (1), pp. 1045-1049.
Fulltext not available.
Grünberger, Felix, Ferreira-Cerca, Sébastien
and Grohmann, Dina
(2021)
Nanopore sequencing of RNA and cDNA molecules in Escherichia coli.
RNA 28 (3), pp. 400-417.
Londei, Paola and Ferreira-Cerca, Sébastien
(2021)
Ribosome Biogenesis in Archaea.
Frontiers in Microbiology 12 (686977), pp. 1-13.
(2021)
Ribosome Biogenesis in Archaea.
Frontiers in Microbiology, Provisionally accepted.
(In Press)
Fulltext not available.
Knüppel, Robert, Trahan, Christian, Kern, Michael, Wagner, Alexander, Grünberger, Felix, Hausner, Winfried
, Quax, Tessa E. F., Albers, Sonja-Verena
, Oeffinger, Marlene
and Ferreira-Cerca, Sébastien
(2021)
Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea.
Nucleic Acids Research 49 (3), pp. 1662-1687.
, Sinton, Matthew C.
, Wernig-Zorc, Sara, Morton, Nicholas M., Holmes, Megan C., Boardman, James P.
and Drake, Amanda J.
(2021)
Altered hypothalamic DNA methylation and stress-induced hyperactivity following early life stress.
Epigenetics & Chromatin 14 (1).
Fulltext not available.
, Quax, Tessa, Albers, Sonja-Verena, Oeffinger, Marlene and Ferreira-Cerca, Sébastien
(2020)
Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea.
Nucleic Acids Research.
(In Press)
Fulltext not available.
, Stadler, Peter F. and Marchfelder, Anita
(2020)
Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea.
Frontiers in Microbiology 11.
Fulltext not available.
, Adams, Zachary
, Cerletti, Micaela, De Castro, Rosana, Ferreira-Cerca, Sébastien
, Fufezan, Christian, Giménez, María Inés, Hippler, Michael, Jevtic, Zivojin
, Knüppel, Robert, Legerme, Georgio, Lenz, Christof, Marchfelder, Anita, Maupin-Furlow, Julie
, Paggi, Roberto A.
, Pfeiffer, Friedhelm
, Poetsch, Ansgar
, Urlaub, Henning and Pohlschroder, Mechthild
(2020)
The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics.
Nature Communications 11 (1).
Fulltext not available.
Ferreira-Cerca, Sébastien, Knüppel, Robert, Kern, Michael, Reglin, Corinna, Ostheimer, Nina, Weiß, Matthias and Jüttner, Michael
(2019)
A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea.
Nucleic Acids Research 48 (4), pp. 2073-2090.
Braun, Christina M., Hackert, Philipp, Schmid, Catharina E., Bohnsack, Markus T.
, Bohnsack, Katherine E.
and Perez-Fernandez, Jorge
(2019)
Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit.
Nucleic Acids Research 48 (1), pp. 405-420.
Oberprieler, Christoph
, Talianova, Martina and Griesenbeck, Joachim
(2019)
Effects of polyploidy on the coordination of gene expression between organellar and nuclear genomes in Leucanthemum Mill. (Compositae, Anthemideae).
Ecology and Evolution 9 (16), pp. 9100-9110.
Mitterer, Valentin
, Shayan, Ramtin, Ferreira-Cerca, Sébastien
, Murat, Guillaume, Enne, Tanja, Rinaldi, Dana, Weigl, Sarah, Omanic, Hajrija, Gleizes, Pierre-Emmanuel
, Kressler, Dieter, Plisson-Chastang, Celia
and Pertschy, Brigitte
(2019)
Conformational proofreading of distant 40S ribosomal subunit maturation events by a long-range communication mechanism.
Nature Communications 10 (1), pp. 1-15.
, Darrière, Tommy, Pilsl, Michael, Sarthou, Marie-Kerguelen, Chauvier, Adrien, Genty, Titouan
, Audibert, Sylvain, Dez, Christophe, Léger-Silvestre, Isabelle
, Normand, Christophe, Henras, Anthony K., Kwapisz, Marta
, Calvo, Olga
, Fernández-Tornero, Carlos, Tschochner, Herbert and Gadal, Olivier
(2019)
Genetic analyses led to the discovery of a super-active mutant of the RNA polymerase I.
PLOS Genetics 15 (5), e1008157.
Fulltext not available.
, Sørensen, Brian B., Längst, Gernot, Sprunck, Stefanie, Grasser, Marion and Grasser, Klaus D.
(2019)
The UAP56-Interacting Export Factors UIEF1 and UIEF2 Function in mRNA Export.
Plant Physiology 179 (4), pp. 1525-1536.
Fulltext not available.
, Ramos Perlingeiro, Rita de Cassia, Jacobs, Laura A. and Cisneros, Bulmaro
(2019)
The intracellular domain of β-dystroglycan mediates the nucleolar stress response by suppressing UBF transcriptional activity.
Cell Death & Disease 10 (3).
Fulltext not available.
Schwartz, Uwe, Németh, Attila, Diermeier, Sarah
, Exler, Josef H., Hansch, Stefan, Maldonado, Rodrigo, Heizinger, Leonhard
, Merkl, Rainer
and Längst, Gernot
(2018)
Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin.
Nucleic Acids Research 2018 (1), pp. 1-16.
, Giacò, Luciano, Carotenuto, Walter, Golfieri, Cristina, Szakal, Barnabas, Dal Maschio, Marianna, Infantino, Valentina, Beznoussenko, Galina V., Joseph, Chinnu R., Visintin, Clara, Mironov, Alexander A., Visintin, Rosella, Branzei, Dana
, Ferreira-Cerca, Sébastien
, Yeger-Lotem, Esti
and De Wulf, Peter
(2018)
Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae.
Nucleic Acids Research 46 (15), pp. 7586-7611.
Fulltext not available.
, Fernández-Fernández, José
, Linnemann, Jan and de la Cruz, Jesús
(2018)
Ribosomal protein L14 contributes to the early assembly of 60S ribosomal subunits in Saccharomyces cerevisiae.
Nucleic Acids Research 46 (9), pp. 4715-4732.
Fulltext not available.
, van Heeringen, Simon J., Vermeulen, Michiel
, Kretz, Markus and Mulder, Klaas W.
(2018)
Splicing and Chromatin Factors Jointly Regulate Epidermal Differentiation.
Cell Reports 25 (5), 1292-1303.e5.
Fulltext not available.
Knüppel, Robert, Christensen, Regitse H., Gray, Fiona C., Esser, Dominik, Strauß, Daniela, Medenbach, Jan
, Siebers, Bettina
, MacNeill, Stuart A.
, LaRonde, Nicole and Ferreira-Cerca, Sébastien
(2017)
Insights into the evolutionary conserved regulation of Rio ATPase activity.
Nucleic Acids Research 46 (3), pp. 1441-1456.
Ferreira-Cerca, Sébastien, Knüppel, Robert and Kuttenberger, Corinna
(2017)
Toward Time-Resolved Analysis of RNA Metabolism in Archaea Using 4-Thiouracil.
Frontiers in Microbiology 8 (286), pp. 1-11.
(2017)
Disruption of the UBF gene induces aberrant somatic nucleolar bodies and disrupts embryo nucleolar precursor bodies.
Gene 612, pp. 5-11.
Fulltext not available.
, Bruckmann, Astrid, Schubert, Thomas
, Längst, Gernot, Griesenbeck, Joachim
, Schubert, Veit
, Grasser, Marion and Grasser, Klaus D.
(2017)
The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors.
The Plant Cell 29 (4), pp. 854-870.
Fulltext not available.
, Klein, Isabella, Rechberger, Gerald N, Wolinski, Heimo, Prattes, Michael
, Pertschy, Brigitte
, Milkereit, Philipp and Bergler, Helmut
(2017)
Viewing pre-60S maturation at a minute’s timescale.
Nucleic Acids Research 46 (6), pp. 3140-3151.
Fulltext not available.
Längst, Gernot, Silberhorn, Elisabeth, Schwartz, Uwe, Löffler, Patrick
, Schmitz, Samuel, Symelka, Anne
, Koning-Ward, Tania de
and Merkl, Rainer
(2016)
Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning.
PLoS Pathogens 12 (12), e10060.
, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D.
, Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M. R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank
, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej
, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M.
, Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D., Rubin, Udi E., Malatras, Apostolos
, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C.
, Lahl, Katharina, Jafari, Mohieddin
, Aibar, Sara
, Zaravinos, Apostolos
, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente
and Ma’ayan, Avi
(2016)
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
Nature Communications 7 (1).
Fulltext not available.
Längst, Gernot, Schrader, Anna, Gross, Thomas and Thalhammer, Verena
(2015)
Characterization of Dnmt1 Binding and DNA Methylation on Nucleosomes and Nucleosomal Arrays.
PLoS ONE 10 (10), e0140076.
, Golfieri, Cristina, Massari, Lucia F., Busnelli, Sara, Pagliuca, Cinzia, Dal Maschio, Marianna, Infantino, Valentina, Visintin, Rosella, Mechtler, Karl
, Ferreira-Cerca, Sébastien
and De Wulf, Peter
(2015)
Rio1 promotes rDNA stability and downregulates RNA polymerase I to ensure rDNA segregation.
Nature Communications 6 (1).
Fulltext not available.
Perez-Fernandez, Jorge, Pöll, Gisela, Li, Shuang, Ohmayer, Uli, Hierlmeier, Thomas and Milkereit, Philipp
(2014)
In vitro reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new insights into their modular architecture.
PLoS ONE 2014.
Diermeier, Sarah Daniela Helena
, Kolovos, Petros
, Heizinger, Leonhard, Schwartz, Uwe, Georgomanolis, Theodore, Zirkel, Anne, Wedemann, Gero
, Grosveld, Frank, Knoch, Tobias A., Merkl, Rainer, Cook, Peter R., Längst, Gernot and Papatonis, Argyris
(2014)
TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning.
Genome Biology 15 (12).
Ferreira-Cerca, Sébastien
, Kiburu, Irene, Thomson, Emma, LaRonde, Nicole and Hurt, Ed
(2014)
Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes.
Nucleic Acids Research 2014.
, Pilsl, Michael, Reiter, Alarich, Williams, Lydia, Gerber, Jochen, Böhm, Maria, Deutzmann, Rainer, Griesenbeck, Joachim
, Milkereit, Philipp and Tschochner, Herbert
(2014)
Binding of the Termination Factor Nsi1 to Its Cognate DNA Site Is Sufficient To Terminate RNA Polymerase I Transcription In Vitro and To Induce Termination In Vivo.
Molecular and Cellular Biology 34 (20), pp. 3817-3827.
Fulltext not available.
, Hamdane, Nourdine, Stefanovsky, Victor Y., Tremblay, Michel G., Németh, Attila
, Paquet, Eric, Lessard, Frédéric, Sanij, Elaine
, Hannan, Ross
and Moss, Tom
(2014)
Conditional Inactivation of Upstream Binding Factor Reveals Its Epigenetic Functions and the Existence of a Somatic Nucleolar Precursor Body.
PLoS Genetics 10 (8), e1004505.
Fulltext not available.
, Obermeier, Ingrid, Längst, Gernot and Wagner, Ralf
(2014)
CpG domains downstream of TSSs promote high levels of gene expression.
Nucleic Acids Research 42 (6), pp. 3551-3564.
Fulltext not available.
and Hurt, Ed
(2013)
Eukaryotic ribosome biogenesis at a glance.
Journal of Cell Science 126 (21), pp. 4815-4821.
Fulltext not available.
, Pusch, Miriam Caroline, Diermeier, Sarah
, Benes, Vladimir
, Kremmer, Elisabeth, Imhof, Axel
and Längst, Gernot
(2012)
Df31 Protein and snoRNAs Maintain Accessible Higher-Order Structures of Chromatin.
Molecular Cell 48 (3), pp. 434-444.
Fulltext not available.
(2012)
Ribosomal proteins L7 and L8 function in concert with six A3 assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.
RNA 18 (10), pp. 1805-1822.
Fulltext not available.
, Neueder, Andreas, Milkereit, Philipp
and Valášek, Leoš Shivaya
(2012)
Small Ribosomal Protein RPS0 Stimulates Translation Initiation by Mediating 40S-Binding of eIF3 via Its Direct Contact with the eIF3a/TIF32 Subunit.
PLoS ONE 7 (7), e40464.
Fulltext not available.
(2011)
Survival of thermophilic and hyperthermophilic microorganisms after exposure to UV-C, ionizing radiation and desiccation.
Archives of Microbiology 193 (11), pp. 797-809.
Fulltext not available.
, Neueder, Andreas, Jakob, Steffen
, Woolford, John L., Tschochner, Herbert and Milkereit, Philipp
(2009)
rRNA Maturation in Yeast Cells Depleted of Large Ribosomal Subunit Proteins.
PLoS ONE 4 (12), e8249.
Fulltext not available.
, Schrader, Anna, Riede, Philipp, Strohner, Ralf, Lehmann, Elisabeth and Längst, Gernot
(2007)
DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes.
Proceedings of the National Academy of Sciences 104 (40), pp. 15635-15640.
Fulltext not available.
and Ferreira-Cerca, Sébastien
Looking through the lens of the ribosome biogenesis evolutionary history: possible implications for archaeal phylogeny and eukaryogenesis.
Molecular Biology and Evolution.
(In Press)
Fulltext not available.
Schlegel, René
(2025)
Investigation of the effects of putative RNA Polymerase I-specific Inhibitors in the eukaryotic model organism Saccharomyces cerevisiae.
PhD, Universität Regensburg.
Tümen, Deniz
(2024)
Non-invasive high throughput monitoring of the exon-specific expression of p53 isoforms identifies novel p53-tailored strategies for the treatment of colorectal cancer.
PhD, Universität Regensburg.
Maldonado, Rodrigo
(2019)
Characterization of Muscle Glycogen Synthase and its Association with RNA in Sertoli Cells.
PhD, Universität Regensburg.
Bartoschik, Tanja Astrid
(2019)
Development and validation of new approaches for quantitative intermolecular interaction analysis by MicroScale Thermophoresis under near-native experimental conditions.
PhD, Universität Regensburg.
Babl, Virginia-Lorena
(2017)
Comprehensive analysis of transitions in ribosomal DNA chromatin states in S. cerevisiae during different growth phases.
PhD, Universität Regensburg.
Schmidhofer, Sandra
(2016)
Active DNA demethylation in the mononuclear phagocyte system.
PhD, Universität Regensburg.
Schmidl, Christian
(2014)
Molecular characterization of human regulatory and conventional T cells.
PhD, Universität Regensburg.
Zillner, Karina
(2013)
Nucleolar epigenomics by dynamic molecular combing and nucleolar matrix analysis.
PhD, Universität Regensburg.
Hamperl, Stephan
(2012)
Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae.
PhD, Universität Regensburg.
Wittner, Manuel
(2012)
Establishment and maintenance of 35S rRNA gene chromatin states in Saccharomyces cerevisiae.
PhD, Universität Regensburg.
Exler, Josef H.
(2011)
Nuclear architecture and structural dynamics - molecular basis of chromatin remodeling induced by human ISWI machines -.
PhD, Universität Regensburg.
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